FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACATATAAAACCTAGAGAGAAGCATTCTCAGGAACTTCTTTGTGATGTTT59.090909090909092No Hit
GTCCATGGCGGCGCGCAGGCTGTCGAACTGGCACACGGCCGCCACCACGT35.454545454545454No Hit
TCTACGAGTCGCGCTGGGAGACCAAGATGACGGTCCAGAACGTGTCGCGC35.454545454545454No Hit
TATCAGAAGTCCGCTGACAATGGTCAATCCGGCGGAACGGTGTCGCTGAA23.6363636363636362No Hit
GAGTCTAGGCTTCATCCTGGGCAGCGGGGGCCTGAGCCAGGCTCGGGCTG23.6363636363636362No Hit
CTCTGAGAAAGTGGCCTTGGGTTCTCTGTCTTCATGGGACTGTGGCTTGT23.6363636363636362No Hit
GATCAAAGGCAGGAGGACAAAGAGATAAGGGTGTTTACTTCCTCAGATTC23.6363636363636362No Hit
ACTGAAAGCAACCCCATCCTCCCCAGGAGCAGGGCAGCAGCACAGTCACT23.6363636363636362No Hit
TCTGTACATCACCATCATCAAAGACCAAAGGTAGATAAAACCACAAAGAT23.6363636363636362No Hit
GGACAAAATCTGTAAGAGTTCTTTGGATTACCTGGCAGAGACTCTTGTTC23.6363636363636362No Hit
GAACAAGACCAAGCCGTGGGCCCTTTCTTGCTTGGCACACCCGGAGCGGA23.6363636363636362No Hit
ACCCCATCTACTAAAAATACAAAATTAGCCGGGTGTGGTGATGCATGCCT23.6363636363636362No Hit
GGCATGGAAACTCATTTTGCAACTGTAAAGGGATGGCTGCACTCAGAGAA11.8181818181818181No Hit
CTAACCTAGCAGAATGATTCTAAGCTTTATCAGCTTGGAAATCTGAGAAA11.8181818181818181No Hit
CTTCAGCCTCCTTTCTGAGAGCCAGTCACATCACATTTTACAGATCTCAG11.8181818181818181No Hit
GCCCACCGCGTGGAACCGCGTCGAGGGGCGCGACATCACCTTCACCGAGG11.8181818181818181No Hit
GGAGAATACGACGGCCGCGGCCGCAGCCGCGATCTATCGGGAACCTGTCT11.8181818181818181No Hit
TTCTTATACTTCCCCTGTCTTTCTGCCTCACTACAGATGGGAACAGTGAT11.8181818181818181No Hit
AGCGAGGTCAAGGCGCTGACGGGGAACGCGAATCCCGACGAGCAGGAACG11.8181818181818181No Hit
GATAACACCCTTCTGCCCTGTTTTTCAGAGAAAGGAGTCCTATTGTCCCA11.8181818181818181No Hit
TCTGAAGGGGGTCGTCAGTAAGGTGCTCAATCACCTTAATCTCCTGTGAC11.8181818181818181No Hit
AGGTTGTTCTCAGGCAAAAATTTGCTAAAAATGGTCAAACAGGACATTAA11.8181818181818181No Hit
CGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGATATGGGGTTTCA11.8181818181818181No Hit
GGCCTGGCTCACCTTGATGGAGCTGTTCCCAAACATCTCCATGGTCAGCT11.8181818181818181No Hit
GTCTTGTTATGTGGCCCAGGCTGGTCTCCAAACTCCTGGCTTCAAGTGAT11.8181818181818181No Hit
TGCTGGTGCCGATGAGCTGATTAGAAAATGGCGCCAGTGGTACTTCACCA11.8181818181818181No Hit
GTTGTGAACGCACAATTGATGCACTTCTGGATCTTTGATCAACTAATTTA11.8181818181818181No Hit
GTACAATCACAGCTCATTGCAGCCTCGAACTTCTGGACTCAAGCAATCCT11.8181818181818181No Hit
TCTCTCGGCAGAAAGCCTACAAGCCTGAAGAGAGTGGGGGCCGATATTCA11.8181818181818181No Hit
GATTTTCCTTTTCCACCACAGGCCTCAAAGCCCTCCAAATGTCCACTTGC11.8181818181818181No Hit
GTGCTACGTCGCCCTGGACTTCGAGCAAGAGATGGCCACGGCTGCTTCCA11.8181818181818181No Hit
ATATTTTAACCTTTTCGAAGAGAGAAATATGAGAGTGTTGACAGAGTGAG11.8181818181818181No Hit
ACCTGACCCTCGAGCCGGGCCAGACCAGCCTGCTGAGGTTCCGAATGGGC11.8181818181818181No Hit
GCGTCGATCACCTCGATCGTGAAACGGGCCCCCTCGGGAAGGTGGAGAGT11.8181818181818181No Hit
GCCATCGATAGTCGCAACGGCGACATTGCCGTTAATTGTGCCGGTATTTG11.8181818181818181No Hit
GAGGATCAAGCAGAGCATTTAAGATCCCAGCCTTGGAAATGTATTCTGCC11.8181818181818181No Hit
GAACCGCCCGGCCTCGGGAGCGCCGGTCTCTCTCTGGCTCGTCAACCTGG11.8181818181818181No Hit
TCGTAGATGTAACTAAGTTAAGATGAGGTCATCCCGGATTAGTGTAGGCT11.8181818181818181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)