FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACAAAAAGAGTGTTTCCAAAATGCCGTATCAAAACAAAGGTTCAACTC59.090909090909092No Hit
GTAGCCCGCGTTCAGCAGGGGCTCCACGTCCATCGCGAAGCGCCCGGGGA35.454545454545454No Hit
TCTTCGCGGTGGACCCCGGCGCCAACGCGTCGCTGGGCGGCATGGCCTCG35.454545454545454No Hit
GGGCACAGACAAACAAAAGACAGCAATAACCTCTGCAGACTTGAATGTCC23.6363636363636362No Hit
ACATTCCCCTTCACCTTCAGGTACAGGCTGTGATACATGTGGCGATCGAT23.6363636363636362No Hit
CGTCACAAGCCCGAATTCCGGGGTAGCCGGGCGCATCCGCACCAACCGTG23.6363636363636362No Hit
ATTTGAGACGGAGTTTTGTTCTTGTTGCCCAGGCTGGAGTGCAATCGTGC23.6363636363636362No Hit
CCCACAGAGGGAGCATTTAAACTAGTCTTACTACAGTCACACAGTCCTAG23.6363636363636362No Hit
ATTCCTGGACTCTACTGAGAACGCTGTACTCCCACTCGCTCCTGGGGCAC23.6363636363636362No Hit
GTCCAGAGTATAGCCTGGGCATGAGATTGAAATTTTTTAAAAGTTCCCCA23.6363636363636362No Hit
CTCTTAACCCTGGGCCAGCTGTCTGCCATTTGGACTGCAAAACCCAGAGG23.6363636363636362No Hit
CCTCAGGGGGAAAAAAAAGTGTTTTTGTAGAAACAGGTTCTCACTATGTT11.8181818181818181No Hit
GGGTATATCTTCACATCAAACCTAGACAGAAGCATTCTCAGAATGTTTCC11.8181818181818181No Hit
GTTCCCGATAGATCGCGGCTGCGGCCGCGGCCGTCGTATTCTCCCTGTCT11.8181818181818181No Hit
GGTGTGGAATCGGCTCACCAGTATGCGCTTGTCGCGGCGCCGGTATGGGA11.8181818181818181No Hit
ACAGAGTAGGGAAGGCGATCTTGTGTGTTCCAGTTCCTTCTTAAAACAGA11.8181818181818181No Hit
GGCAGCAGGGCAGTGCAGCTGAGCAGTGACAGTGAACAGGGCCATTCAGA11.8181818181818181No Hit
CCCCAGGCCCGTAGGTGGCACATGCAGGCAGATGTTAGCTGTGGTAGTAC11.8181818181818181No Hit
GCTTTAGACACAGTCACAGCTACCCAAGGTGGCACCTGTGCCCTTGTAGG11.8181818181818181No Hit
CCCCAGGCCCGTAGGTGGCACATGCAGGCAGATGTTAGCTGTGGTAGTAA11.8181818181818181No Hit
CGCCTGCGCCGGAGTGCGGGGGGAGTACTACCTCGCCTACTTCGGCGTCC11.8181818181818181No Hit
ACACATCCTGCTGACCGCTGTTACCTGTTTAATCCCAGGTGTTCCCCAGG11.8181818181818181No Hit
GGCAGAGAATCACTTGAACCCAGGAGATGTAGGTTGCGGTGAGTCAAGAT11.8181818181818181No Hit
GACTTAGCTTTGTACCCAGGCTGCTCCACTTACTGGCTGTGTGAACTTAA11.8181818181818181No Hit
CCCTTGGGCTTGCCGGTGGAGCCCGAGGTGTAGAGGATGAAGAGCGGATG11.8181818181818181No Hit
GTAGCCCATCTGCAGGGACATGGAGGAGTTGTCACACTTGTCGGTTCCCA11.8181818181818181No Hit
CCCCCGTTACTGGTTTGCGTATTAAGGATTCCGGCAATCGTCCAGTTCAT11.8181818181818181No Hit
GCAAGGCAGCTGAGGCTCAGGAGTGAAACCAGGACTTGAGGACACGATGA11.8181818181818181No Hit
CTACCATCCCAATACTCGTACAATGTCCTAACTTCTTCCAAAGTATTAAA11.8181818181818181No Hit
CCAAAATGGTAAATCCCTGTCTCTACTAAAAATACAAAATTTAGCCGGGA11.8181818181818181No Hit
GTGCTACTCAGCAACTAATTTTCAGGCTCAAGGAGAAAAAAATAAATAGA11.8181818181818181No Hit
TAATTAAAGATTTCCTGCCTGCTTTGTGGGTAGGTGACACTCTCATTGAG11.8181818181818181No Hit
GTCTTCTCCCGCTCGCCCATCAACTGCCTGGAGCACGTGCGTGACAAGTG11.8181818181818181No Hit
CCACCCGTCTCCTCACAGCCAAGCCTGGCTTCCATTCAAACTTTCCGGAA11.8181818181818181No Hit
GGCGAGTCGATCTGGGCGTAGGCGGTGGTGCGGTCGTCCAGGCGGACGTA11.8181818181818181No Hit
TCGAATGCCAAGAGGCGGTGGGGTGCCCTCGAAAAGATCAGGCCGCTGGA11.8181818181818181No Hit
TCTCTGTCTAGCATGAGATTGCTTCTACCCAGTTAGTGAAGGTATCTACC11.8181818181818181No Hit
GTTTAGCGCTTCCTTCAGGAGGTCTTTTAGGGCAGGCCTGGTGGTGACAA11.8181818181818181No Hit
GTGCCAGGGCAGTGATCTCCTTCTGCATCCTGTCGGCAATGCCAGGGTAC11.8181818181818181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)