FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA42.547770700636943Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG42.547770700636943Clontech Universal Primer Mix Long (96% over 26bp)
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT42.547770700636943Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAG42.547770700636943No Hit
GTGGTGGCAGCAGGATCCATCCTCATTTGCATGTGTTAGCAGCAGTGGCA31.910828025477707No Hit
GTACAAAAGAGAGGAGGCAGAGATGGTACACACTCATACAGAAGCTTCTC31.910828025477707No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC31.910828025477707Clontech SMART CDS Primer II A (96% over 26bp)
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT31.910828025477707Clontech Universal Primer Mix Long (96% over 26bp)
GATTGTCCACTGAATAGAAGGCAAGCTTTCCCTCCTCAAGGTTCAGCCAG31.910828025477707No Hit
GCCATCCCGCCCTTCATCGCGGTCCTCACCGGCATCACCGACTCGATGGT21.2738853503184715No Hit
GCCGATGGCCGCGCAGGCCGCCCCGGCCCCGAAGGTCGACCAGCGCGTGC21.2738853503184715No Hit
ACGCAGAGTACATGGGAGCTCCAACCAGGGCAGCCTTCCTGAGAAGATGC21.2738853503184715No Hit
GGTTATCCTGGGGCTCATCCCGCCGCAGAAATAACTCCTCCTCCTCCTTC21.2738853503184715No Hit
GGGCGTAGTCCTGATCGGCCCTAACTGCCCAGGTGTGATCACCCCAGGCG21.2738853503184715No Hit
CCTCATACCCTTCATACGCCCAGCGGAGCTGGCGCTGGAGGCCCAAATCA21.2738853503184715No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG21.2738853503184715No Hit
TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC21.2738853503184715No Hit
GTGGGCAGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAATGTG21.2738853503184715No Hit
GCCCCGGCCACCCCTCGGACTCGCTCACTCGCCTGTCTCCTCTGGAGCCG21.2738853503184715No Hit
GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA21.2738853503184715No Hit
GAGCTGGCTAGTCCCCTTCCATTCCACACAACAAGAGTCCATAGTCCTTC21.2738853503184715No Hit
ACACGCTGTCGCGTCTCGGCGGCGACGAGTTCGCGATCGTCCAGATCGGC21.2738853503184715No Hit
GGGCTTTCACTCCGCGCTCACGGCGGCGGCCAAAGCGGCGGCGACGGCGG21.2738853503184715No Hit
CCCTATCGCTGGAGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTTC21.2738853503184715No Hit
TCATGGTGGCGCGCGGCGACCTCGGCGTGGAGCTGCCGCCCGAGCAGGTG21.2738853503184715No Hit
CCACCGACCCGCGCCAACAACCCTGACGGCGCCGGGTGTGCTGTTACAGG10.6369426751592357No Hit
CCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGG10.6369426751592357No Hit
ATCTCCCAGGAAGCCACCCCAACTGCCCAGTGGCTGCAATTCCTAGTGTC10.6369426751592357No Hit
GCTCTAAGCTCGGCAATCGCTCTTGCCGTGCGAGATGCTAGCAAAAAGGT10.6369426751592357No Hit
GGTTCAGCCAGATGCCCACCACCCCAGGTCTGTCTGAGCCAAGGACAGTT10.6369426751592357No Hit
CAGTGGTATCAACGCAGAGTACATGGGGCTTTGGTGAAGTCAAGGATTCG10.6369426751592357Clontech SMARTer II A Oligonucleotide (100% over 22bp)
CCTTTGTGGCAGCCCCTCCCATCACAGGCCCAGAGGTTTAGTAGGAAAAA10.6369426751592357No Hit
TAGCTTAACAGCTCATCCCATTAGGAAGGAGAATCTGGGTGGGGCATGGT10.6369426751592357No Hit
GCCAATAACCAGGGTCCTACAGACGCCTTCTCTTCGGGGGCATTTCTCGA10.6369426751592357No Hit
CTCAGGCTACCTAGCAACAAGGCCCAGGTGAAGCCAGGGCAGACATGCAG10.6369426751592357No Hit
CTGCATTTCCATCTGACATACCGGGTTCATCTTACTAGGGAGTGCCAGAA10.6369426751592357No Hit
CGGTGATGCTGCCGCGCAAGATCAACCTGAACATCGTGGCCGAAGTTGGG10.6369426751592357No Hit
CCTATTTACAACTCAGGTCACATTCTGTGGTTCTGGGGGGTTAAGACTTC10.6369426751592357No Hit
CCATACAACTGATCCCAGCTAGCATGTGAGATGGACTCTATTTGCCAAGG10.6369426751592357No Hit
CTTCGGGGGCATTTCTCGAGGTCTTGGCGACGTTGCCGCGCTGGGTGATG10.6369426751592357No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
GGCCGCGGCCGATGGTGTCGGGGCAGATCACGCGGAAACCGCGCGAGGCG10.6369426751592357No Hit
ATCTTCGCGGCGCCACCACCTGCCCCGGCCACCCCTCGGACTCGCTCACT10.6369426751592357No Hit
TTTTAGGCCCACATCCGCATCTGCTATGAAGTCATGGAAGCTCTGGCCCT10.6369426751592357No Hit
CTTGGCGACGTTGCCGCGCTGGGTGATGTTCTTGCTGTGCTTCTCGTTGG10.6369426751592357No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG10.6369426751592357No Hit
TTCCCAGGCCCTGTCTTCTGGAAAGCATTACTGGGAAGTGGACACTAGGA10.6369426751592357No Hit
GTGATGTCCTATCTGCAGAATCCTCAGCCCATGACGCCCCCATGGTGATA10.6369426751592357No Hit
GGGTAAGACCCAGAAAAATAAAACATCTTACCTAGGTGAAATGGGAAAAG10.6369426751592357No Hit
CGTTCCTGGTCTCTGGCTTTCCACATGTCCCCACAAGGTTTTATGCCAGC10.6369426751592357No Hit
GGATACCACCATGGAAGCCAAAATCAATCTCCTAAAAGAACTCCAAAAAC10.6369426751592357No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCAATGTACTC10.6369426751592357Clontech SMART CDS Primer II A (96% over 26bp)
TCCTTATACTGGCACTTTAACCATTGGATGATGACAGTTATCTCCCGGGT10.6369426751592357No Hit
GACCAGGCCACGGCCACGCTCAACGCGGCGCGGGTGCCGACCTATCCGAC10.6369426751592357No Hit
GCAGGTGCCTGTAATCCCAGCTACCCGGGGGCTGAGCCAGGAGAATAGCT10.6369426751592357No Hit
TACTCCTCTTTTGTGAATCACTACAATAGTCCAGCCATGTACTCTGCCAG10.6369426751592357No Hit
GCCTGGAGGTGTCCAAGGATTCCCGTACAGTGACTGTGTCTCACCGCCCA10.6369426751592357No Hit
GTCGCCGTCCCTGCTGCCCTCCTTGTCCTCGTCGGAGTCATCGTCATCTC10.6369426751592357No Hit
AGAGCCTCCTTTCTCTCTGAAGTCAGAGGCAAGGAGTTCATGTGAGGGAG10.6369426751592357No Hit
GACAACAAAAATGAAGAGAGCCAATAACCAGGGTCCTACAGACGCCTTCT10.6369426751592357No Hit
CCTCGGACTCGCTCACTCGCCTGCCTCCTCTGGAGCCGCTGCGAGGCTCG10.6369426751592357No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
CCTCACAAGGACAACCAGAACTCTGCGATATCCACTCTACAAACCTCAGA10.6369426751592357No Hit
CCCTAGGAAAGGGCCAGGTTCCCTCTATCCAGCTGGGGGCACCGAGACGG10.6369426751592357No Hit
ATGTGGAATTGTGAGCGCTCACAATTCCACAACGGTTTCCCTCTAGAAAT10.6369426751592357No Hit
CCAGAGAACCATCTCTAGCTTCTTTGGCATTGGAGAACCATTCTCATTAC10.6369426751592357No Hit
AACGCAGAGTACTTGGGAAGCAGTGGTATCAACGCAGAGTACTTGGGAAG10.6369426751592357Clontech SMART CDS Primer II A (100% over 26bp)
CGCTCACTCGCCTGCCTCCTCTGGAGCCGCTGCGAGGCTCGGCTCGTGGT10.6369426751592357No Hit
CTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTCG10.6369426751592357No Hit
TCCAGACCGCCTGAGCGCGCATCGCCGCAAGACTCCGAAAGAGCAACAGG10.6369426751592357No Hit
ACCCTATCGCTGGAGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTT10.6369426751592357No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC10.6369426751592357Clontech Universal Primer Mix Long (96% over 25bp)
CACTTCACATGCCCATCCTGATACTTTGAATAATCTGGAAAATTGCAGAA10.6369426751592357No Hit
GATGTAAGCCATACAGCCAGAAGGCAGGGTACAAAAGAGAGGAGGCAGAG10.6369426751592357No Hit
CTCTTCGGGGGCATTTCTCGAGGTCTTGGCGACGTTGCCGCGCTGGGTGA10.6369426751592357No Hit
TCGCTGTCTACTGCTCCTTCATCAGCTTTGCCAACTCTCGGAGCTCGGAG10.6369426751592357No Hit
GTGTAGAGATATGTCACAATACCCCCATAGGCCGAGCCTAGATAAAAGTC10.6369426751592357No Hit
CAGTAAACTAGTAGCATCCCGATCTTTTCCCTATCTAATTCACCTCCTAT10.6369426751592357No Hit
GGTCCTTCTCCGTGCAGAAGTAGCGGATCACGTTCGGGTGCTCCTCCGAT10.6369426751592357No Hit
GTACATGGGGCTTTCACTCCGCGCTCACGGCGGCCCCATGTACTCTGCGT10.6369426751592357No Hit
GTCAGGGACGGACCTGGTGCAGACCAGTGGGCCCACACCTGCTTTCCTAT10.6369426751592357No Hit
CTCCACGTTGATGGGGGAGCGAGGGTCTCGGATCAGCGCCTCCAGCTTCC10.6369426751592357No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG10.6369426751592357Clontech SMARTer II A Oligonucleotide (100% over 23bp)
CCTGAAAAGTGCTTTTCAATGCAAACTGGAAGAGGCAGCCCACAGTTTTT10.6369426751592357No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
GGGTAAGACCCAGAAAAATAAAACATCTTACCTATGTGAAATGGGAAAAG10.6369426751592357No Hit
ACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGGCTTTGGTGAA10.6369426751592357Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTATCAACACAGAGTACATGGAAAGCAGTGGTATCAACACAGAGTACATG10.6369426751592357Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC10.6369426751592357No Hit
GTATCAACGCAGAGTACTTGGGGCTTTCACTCCGCGCTCACGGCGGCGGC10.6369426751592357No Hit
GTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGA10.6369426751592357No Hit
GAAATCAGCTGCTGCATCATCTCCTCCTGCCCAGGGCCCCATGCTATTGT10.6369426751592357No Hit
ATCTTGCGTCGTGCAGCTGAAAAAGCTGGTCTTGAAGATCTTGCATCTGT10.6369426751592357No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
TTCCTGTTGATACCGTCTGCGATAGGCTAGTTCATAAACGAGGGGCGATG10.6369426751592357No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
CTCCTGCGCACCTGCCCCGCTCGGTCAGTCAGTCGGCGGCCGGCGCCCGG10.6369426751592357No Hit
GGATATAAGCCATACAGCCAGAAGGCAGGGTACAAAAGAGAGGAGGCAGA10.6369426751592357No Hit
CCTTCCATGACAGCGGCACTCGATGCAGGCCATCCGGTTGTGCTCGATAA10.6369426751592357No Hit
GTCTTCACAGTCTGGGGAGGAGGTGGCAAGAGTGACAGCAGGGCCCCTCT10.6369426751592357No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
GGCAAATTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTCAGGAAA10.6369426751592357No Hit
ATACAGAAGTTTCTCCTGATTGTCCACTGAATAGAAGGCAAGCTTTCCCT10.6369426751592357No Hit
TCCAGGATGTAAGCCATACAGCCAGAAGGCAGGGTACAAAAGAGAGGAGG10.6369426751592357No Hit
GCCGGGACATGGCAGCCCAGGCCGGCGCCGCCGCACTGAGCTTTGCCAGC10.6369426751592357No Hit
ACTCTGCGTTTATACCACTGCTTCCCAAGTACTCTGCGTTGATACCACTG10.6369426751592357Clontech Universal Primer Mix Long (95% over 23bp)
GCACTGGAGAACAACCAAGGCAGTCAGGACTGGGGAAATTAAGATTCCGG10.6369426751592357No Hit
AGGCTGGTATCACCATGGGGGCGTCATGGGCTGAGGATTCTGCAGATAGG10.6369426751592357No Hit
GGCCTGGACTGCCTTTCAAATTTACTTGGAGACACAGAGCACTGTAGCCC10.6369426751592357No Hit
GCTCTACTTCGACCGGGTCAACAAGTCGGGCGGCGTGAACGGCCGCAAGA10.6369426751592357No Hit
CCATTCCACACAACAAGAGTCCATAGTCCTTCCCAGGACCTGGTCGCGGC10.6369426751592357No Hit
GCTTGGGTCGCTGTCTACTGCTCCTTCATCAGCTTTGCCAACTCTCGGAG10.6369426751592357No Hit
GCTGAAGTGGTGTGCTTGGGTCGCTGTCTACTGCTCCTTCATCAGCTTTG10.6369426751592357No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
GTCCTCGTCCCGGCGTTCTTCCTGCCGCGCCGCCGCGCCGCCCGGGCCGT10.6369426751592357No Hit
AGTGATATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTA10.6369426751592357Clontech SMARTer II A Oligonucleotide (100% over 24bp)
CATCTGCTTTGCAGGGCTTGTCTATCAAAGCCCGACTCTGTGCCTGAATG10.6369426751592357No Hit
CCTGTCAAGCGGATCAGGACGTGCACGCCTTCCAGGACGTAGCCGCACAC10.6369426751592357No Hit

[OK]Adapter Content

Adapter graph