FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGGCTTTCACTCCGCGCTCACGGCGGCGGCCAAAGCGGCGGCG53.4722222222222223No Hit
GCTGAGGCGGGCGGATCACCTGAGGTCAGGAGTTTGAGACCAGACTGGCC32.083333333333333No Hit
TAGCTAGCGTCTGGCCTGAGAACCTCGGCGCTCCGGCGGCGCGGGCACCA32.083333333333333No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG32.083333333333333Clontech Universal Primer Mix Long (96% over 26bp)
CTGGTGACATGGCAGAGTGACCACACATCCGCAGGGGTGGAGAGCAGCAG32.083333333333333No Hit
CTCACGGCGGCGGCCAAAGCGGCGGCGACGGCGGCGCGAGAACGACCCGG21.3888888888888888No Hit
GATGAATACCTTGGGGGGTAGAGCACTGGATGGATGCGGGGGTCGCGAGA21.3888888888888888No Hit
CACCTGCCCCGGCCACCCCTCGGACTCGCTCACTCGCCTGCCTCCTCTGG21.3888888888888888No Hit
TCTCTTCTCTGCAGCTGATTTGTCCGCCTCAGCAGTGGGGCCAACAGCCC21.3888888888888888No Hit
GCGGCCGCCCAGCTCGCGGCACTCACGCCGGCCTTCGCCCAGGCCGCCGG21.3888888888888888No Hit
GTCCAGGACCGCGCGGCTAATCACGTAAGACTTCACCCCACGGGCCTCCA21.3888888888888888No Hit
GCTCCAGAGGAGGCAGGCGAGTGAGCGAGTCCGAGGGGTGGCCGGGGCAG21.3888888888888888No Hit
GGAGTGTGTGCGCCGGGAGCTGGCGGGGGACCGCCTTGGAGACCCGAAGC21.3888888888888888No Hit
GTTCTTGCTGTGCTTCTCGTTGGCCATACGGATCCTTTGCTTGGCGACCA21.3888888888888888No Hit
ACCCTGCTGCCTCCCATTTGGGCCTCCCCTGGGCTGGCTCCACAGTGGAA21.3888888888888888No Hit
ATGCTTTACTGAATTGTTTTCAACCAGGGTATCAAACATCAGGAATGAGT21.3888888888888888No Hit
AAGTAAACCACTTTAGGCAGTGACATGAAAGGGGGCCACCATGCTATGGA21.3888888888888888No Hit
GACTTCGGCTCGATGCTGCGCCGCAGCCAACTCGGCACGGGTCCGCCGGA21.3888888888888888No Hit
AAGGTGGGGGCCCCACCGGTGCTCTTGGTACGAAGATCCATGCTAAATTC21.3888888888888888No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG21.3888888888888888Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCA21.3888888888888888No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
CGCTAGCTACGGCCACTGGGCCTGGGCGCCGCAAGCGCGAGGTCTGAGCA21.3888888888888888No Hit
TGTCAGTGGTGGTGGGGCCAGAGCAGCTCACTTAATTCACATCTTGTGAA21.3888888888888888No Hit
ATACAGCCAGAAGGCAGGGTACAAAAGAGAGGAGACAGAGATGGTACACT21.3888888888888888No Hit
CCTTCAGCAAGCATTTTCAAGTTCTGCACAAATGGAGCAGTGCACAGAAT21.3888888888888888No Hit
GGATGCGTGTTGGCTGGTGGGAAGGCAGGCTTTGGCCCCCTCGTCTTTAG21.3888888888888888No Hit
CTTCGCTTCCACGAAGCTCACGACGAAGAACTGTATCTTGCTCAACTGTC21.3888888888888888No Hit
CACGGTGACCTGCCAGGCGGTCAGCGTCTTTTCGAACGAGTCGTAGCCGT10.6944444444444444No Hit
CTCATTAACAGTCTCAATAGTTCCGCTAATGCGATTGTTCGCCATCTAGG10.6944444444444444No Hit
CACTCGCCTGCCTCCTCTGGAGCCGCTGCGAGGCTCGGCTCGTGGTGCCC10.6944444444444444No Hit
GTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCGGCAGTCCT10.6944444444444444No Hit
AGGCTGCACTCACAGTCTCTTCAGGAGCCTACCAGAGGCAGCCTGTCCCC10.6944444444444444No Hit
CTCTATATGCATGAGAAGGAGGGCTTTTTGCTGCGCTCCTATTCCCAAGA10.6944444444444444No Hit
CCCACTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTA10.6944444444444444No Hit
GTGGCGCTGGCAGTCAACGCGAGCGCGCAAGCCATCAGGCCGGAACGAAA10.6944444444444444No Hit
GTAAACTAGTAGCATCCCGATCTTTTCCCTATCTAATTCACCTCCTATTA10.6944444444444444No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTACAAGATAAGCCTTAGTTTCTTCATTTGCCAACTGAGATACTAATACA10.6944444444444444No Hit
TCCCTCTATCCAGCTGGGGGCACCGAGACGGCCTCATTCAGGGAAGTCCA10.6944444444444444No Hit
GCCGTCAGCCGGGTTTTGATCCCCGGCTGATGGCCTATCCATAACAGGGT10.6944444444444444No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGGCTTTCACTCC10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATGGTACGTCATCCATGTCAGTAGACACAGACCTACATCATCGCTGTTAC10.6944444444444444No Hit
GCCTTGGGGGCGGCAGCCTGGGCCGGATACCTCCTCGGCATGCAGTTGAC10.6944444444444444No Hit
ATTGAACTGCAGCATGGGAGCGACTGCCATTGCTCTTTCAGTTTGACTTG10.6944444444444444No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGATGTACCAGGAGGCAATTTGTCAGTGTTCTACTGCATTGTACATTGA10.6944444444444444No Hit
CCGCGCTCACGGCGGCGGCCAAAGCGGCGGCGACGGCGGCGCGAGAACGA10.6944444444444444No Hit
ATCTTAAGGTCAGTCACTTCACATGCCCATCCTGATACTTTGAATAATCT10.6944444444444444No Hit
GTTAGGAGCAGTAACAGGCTTGGAAAAGAACTACCAGGAAAATAAGACCT10.6944444444444444No Hit
TCCTCAAGGTTCAGCCAGATGCCCACCACCCCAGGTCTGTCTGAGCCAAG10.6944444444444444No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC10.6944444444444444No Hit
CACTAGGAATTGCAGCCACTGGGCAGTTGGGGTGGCTTCCTGGGAGATGA10.6944444444444444No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GGATGTAAGCCATACAGCCAGAAGGCAGGGTACAAAAGAGAGGAGGCAGA10.6944444444444444No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTTGAATCAA10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACC10.6944444444444444No Hit
GGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGCAG10.6944444444444444No Hit
ATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAG10.6944444444444444No Hit
AAAAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CTCACGGCGGCGGCCAAAGCGGCGGCGACGGCGGCGCGAGAACGACCAGG10.6944444444444444No Hit
GTGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGTGCTTG10.6944444444444444No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC10.6944444444444444No Hit
CTGCGCACCTGCCCCGCTCGGTCAGTCAGTCGGCGGCCGGCGCCCGGCTT10.6944444444444444No Hit
CTCCTCTGGAGCCGCTGCGAGGCTCGGCTCGTGGTGCCCGCGCCGCCGGA10.6944444444444444No Hit
TTAAAATTGTGGAGGCTTTCAGTTGAGAGGAGGAGTAAAGCAAGCCTCTG10.6944444444444444No Hit
GCATGAAGCTACTCATCATTTGCTTCGTGTCCTCCGAGCTCCGAGAGTTG10.6944444444444444No Hit
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC10.6944444444444444No Hit
CGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAA10.6944444444444444No Hit
TTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTC10.6944444444444444No Hit
GCCGTCAGCCGGGTTTTGATCCCCGGCTGATGGCCTATCCATAACAGGTT10.6944444444444444No Hit
CACTCCGCGCTCACGGCGGCGGCCAAAGCGGCGGCGACGGCGGCGCGAGA10.6944444444444444No Hit
ACGCAGAGTACATGGGGCTTTGGTGAAGTCAAGGATTCGAGTCAGCTGAA10.6944444444444444No Hit
CCCCTCGGACTCGCTCACTCGCCTGCCTCCTCTGGAGCCGCTGCGAGGCT10.6944444444444444No Hit
CCACCCTACTTCCTGTTCCAGATGCGGGTGGACGGGCACTCCTGAGCGAC10.6944444444444444No Hit
CCCAGGTCTGTCTGAGCCAAGGACAGTTTCCTTGACCATGTGCCATGCAG10.6944444444444444No Hit
CCTATCCGCTGGAGCGCACCAACGGCGCGCTGGACGACCTGCGCGCCGGC10.6944444444444444No Hit
CTCCTGGCTGGAGGCAAAACGATACAAAACCAGTCCACGTAACAAGGTTT10.6944444444444444No Hit
ATCTTGGCCCACTGCAACCTCTGCCTCCCAGACTTAAGCGAGTCTCGTGC10.6944444444444444No Hit
GCCCAGGCCCAGTGGCCGTAGCTAGCGTCTGGCCTGAGAACCTCGGCGCT10.6944444444444444No Hit
GGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATC10.6944444444444444No Hit
CGTGTTAGATATTGAGGCTGCTTCGTGTCGGCACGAAGTGTCTTCCGATG10.6944444444444444No Hit
TTCTCCGCGAGCGGCATCGCCGCCGCGAGATTGCCGGTGGCCACGTAGCC10.6944444444444444No Hit
GAGGAGTTATTTCTGCGGCGGGATGAGCCCCAGGATAACCTCCGCGAGCA10.6944444444444444No Hit
GCCTAGAAGGGTCACATTTTGGACCCTGTCTATCCACTAGGCCTGGGCTT10.6944444444444444No Hit
CAAATGATGAGTAGCTTCATGCTGTCCATCTCTGCCGTGGTGATGTCCTA10.6944444444444444No Hit
GCCCAGGGACCCAAGAACCTGCCCACCTGCCTGGCCTTCTGCTGCCTCTA10.6944444444444444No Hit
GTACGTGTCAGTGGACGTACCCGCCCTTGACGAAGCGCACCGGCTCGGCG10.6944444444444444No Hit
CCTCAACCCCAAACAGACAGCTTTGTGGCTCACTCACCTGTACTCTGCAG10.6944444444444444No Hit
TCGTGGTGCAGCATGTGGTCGGCGTCCTCGATCCAGGTTTCGTCGACATC10.6944444444444444No Hit
CGGCTCGTGGTGCCCGCGCCGCCGGAGCGCCGAGGTTCTCAGGCCAGACG10.6944444444444444No Hit
CCCTATCGCTGGAGCTGTGAGAGGTTTTCTACCAGCCAGGTCTTATGTTC10.6944444444444444No Hit
GTCTAGGACATTTTCATTGCCGTTTTGCTGTTTTCAAGACTCACTTTATT10.6944444444444444No Hit
GGAGAGAGACCTAGGCCTCGCCCCATGGACACTCTCGGCGCCAAGGCTCC10.6944444444444444No Hit
CCTGTAATCCCAGCACTTTGGGAGGCACAGGCGGGCGGATCACCTGAGGT10.6944444444444444No Hit
TCCTGGCCCTTCTGATGCTGTGCTCTCATGGTTTTCTCCTTGCCCTACTG10.6944444444444444No Hit
CGCTGTGAGTGTTACAGTTCTTAAAGATGGTGTATTCGGAGTTTGTTCCT10.6944444444444444No Hit
AGACCACACTGACCACAAATGACATTGTCATTAGCAAGCTGACCCAGATC10.6944444444444444No Hit
GTCCACTGAATAGAAGGCAAGCTTTCCCTCCTCAAGGTTCAGCCAGATGC10.6944444444444444No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGGTTGCAGTGAGCCTAGATCGCACCACTGCACCCCAGGCCTGGCTGACA10.6944444444444444No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGCTGTCTCTTATACACATCT10.6944444444444444No Hit
GTAATATAGATTGGCGCTAGTAGATCACAGAACAACCGCCGCATACGGCC10.6944444444444444No Hit
AGGCCAGACGCTAGCTACGGCCACTGGGCCTGGGCGCCGCAAGCGCGAGG10.6944444444444444No Hit
GGGCACAGGAGTCCAGGCCCAGGGACCTCTGCAGAGCAGCCTCCAAACTT10.6944444444444444No Hit

[OK]Adapter Content

Adapter graph