FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTCGTGGTGCCCGCGCCGCCGGAGCGCCGAGGTTCTCAGGCCAGACGC53.4722222222222223No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT42.7777777777777777Clontech Universal Primer Mix Long (96% over 26bp)
CTCCTGAGGTCCCAGCCTGGCCATGCCTGCTTGCAGCACAGCCTTGGATG32.083333333333333No Hit
GCCAATAACCAGGGTCCTACAGACGCCTTCTCTTCGGGGGCATTTCTCGA32.083333333333333No Hit
GAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCGGTGGCGTGATCTCGGCTC32.083333333333333No Hit
CACCAAGCAGGCTGAAAAAATTGTTGGAGAGTTCATCCATTTCTAGAACC21.3888888888888888No Hit
GGCTATAGGTTACTTGTTTGGAAGCATTTTCAGTGAATGAGGCCAGTCTG21.3888888888888888No Hit
GTCTAGGTTTGGGCGCGTTTTTCTTTTGGAAAAATTCCCCAAGCAAAATA21.3888888888888888No Hit
TCCTGATACTTTGAATAATCTGGAAAATTGCAGAACCACAGACAACAAAA21.3888888888888888No Hit
AGATCAGTGAGAGGACTGACCTCATGCAGGGAACACTGGTTAGCACGCAC21.3888888888888888No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.3888888888888888Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTACTTGGGGCTTTCACTCCGCGCTCACGGCGGCGGCCAAAGCGGCGGCG21.3888888888888888No Hit
CTTCCTGGGAGATGAGCCGCGACCAGGTCCTGGGAAGGACTATGGACTCT21.3888888888888888No Hit
CCCTGACTCATGGGATGGGGAGTGAGTTCTCTTTAACGTAATACCAGGGC21.3888888888888888No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
CACGGCGGCGGCCAAAGCGGCGGCGACGGCGGCGCGAGAACGACCCGGCG21.3888888888888888No Hit
GAGCGCCGAGGTTCTCAGGCCAGACGCTAGCTACGGCCACTGGGCCTGGG21.3888888888888888No Hit
CCCGAGGGGCTCTCGCTTCTGGCGCGACCCGCTCCGGGGACAGTGCCAGG21.3888888888888888No Hit
AGTCCGAGGGGTGGCCGGGGCAGGTGGTGGCGCCGCGAAGATGGTCGCCA21.3888888888888888No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
CTCCACGTTGATGGGGGAGCGAGGGTCTCGGATCAGCGCCTCCAGCTTCC21.3888888888888888No Hit
GGGTACAAATCACCGGTAGCAACGGCGCGGGGAAGACAACGCTTCTCCGT21.3888888888888888No Hit
GTATCAACGCAGAGTACTTGGGGCTTTCACTCCGCGCTCACGGCGGCGGC21.3888888888888888No Hit
GTACGGCACGATGACGCGGAAGCCCGCCGCCGCGAGCGCGGGCGCCACGT21.3888888888888888No Hit
ACCTTCTCGATTCCAACGTCTGGATGTACAGCTAATGGCAGGAGTGGAAG21.3888888888888888No Hit
GTGCCGATCCGCGGCGTTACAGCTTGTTGTGGCTCGGCGCAGTGACCGTG21.3888888888888888No Hit
CTGGAGACATGAAAGCACCTCTGGGTCCTATCCAAGCCATGCAGAATCCA21.3888888888888888No Hit
GGGCTGCACCTACCTCTGCACCACCTTCTAAGTCACGTCACCATGAGATG21.3888888888888888No Hit
GCTTCGGTGCACGTCTTGAGCCCCGTTACATTTTCGCCGCAGGAACCCTT21.3888888888888888No Hit
GGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCT10.6944444444444444No Hit
CTGTTAGGATCTACAGTCCTGATCAGATTCAGGTTTGATTTTTTTTTTTT10.6944444444444444No Hit
CGTGAGCGCTGGGCGATGACCATCGCCCCCAGCACCACGACGACCCCCGC10.6944444444444444No Hit
GGTAGGAGGATCGCTGGAGACCAGGAGTTCAAAGCCAGCCTGGGCAACAT10.6944444444444444No Hit
CCTCTGAAGACAGGACGTCCCCTTCACTACTTGCTGCAGTAGCAATACCT10.6944444444444444No Hit
GAGTACATGGGGCTTTCACTCCGCGCTCACGGCGGCGGCCAAAGCGGCGG10.6944444444444444No Hit
GCATCGAGGGGTAGGGCAGTGCGAGACGCCGCGACAGCTGCAGCAGCAGG10.6944444444444444No Hit
GTTTATTGGAAGCATCAACCTGCGCCGTCTTGTTAACTTGTCATATCGCG10.6944444444444444No Hit
NTCTTCCTCCTGCGCACCTGCCCCGCTCGGTCAGTCAGTCGGCGGCCGGC10.6944444444444444No Hit
CCCCAGTAGCAGCGCCATGGCCGGGTGGACCGCCTACATCGACAACCTCA10.6944444444444444No Hit
GGTCTTATGTTCCCAGGCCCTGTCTTCTGGAAAGCATTACTGGGAAGTGG10.6944444444444444No Hit
AGCTAGCGTCTGGCCTGAGAACCTCGGCGCTCCGGCGGCGCGGGCACCAC10.6944444444444444No Hit
GTACATTGGCCTTTCACTCCGCGCTCACGGCGGCGGCCAAAGAGGCGGCG10.6944444444444444No Hit
CAGCGTTTGAGGTGCCGCCGGTTTCGTTTTGCGCATTGACGATCATGTAC10.6944444444444444No Hit
GGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTG10.6944444444444444No Hit
GCCCCGGCCACCCCTCGGACTCGCTCACTCGCCTGCCTCCTCTGGAGCCG10.6944444444444444No Hit
CTTGGCGACGTTGCCGCGCTGGGTGATGTTCTTGCTGTGCTTCTCGTTGG10.6944444444444444No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG10.6944444444444444No Hit
GCACTGGTGCCTGGGAACAAAGATGGATAGGGGGACTTCTGCCTGCCGAC10.6944444444444444No Hit
GGGGAAGGGAGGCAGGAGGGGTAAGCCTAGGGTGTTCCCTAGGAAAGGGC10.6944444444444444No Hit
TCAGTACCGTGGGTAGGCCTATGGGATACAAAGGTGAAAATCCCAATGCC10.6944444444444444No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTGAGGGGAGTTGAA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CTCGAGGTCTTGGCGACGTTGCCGCGCTGGGTGATGTTCTTGCTGTGCTT10.6944444444444444No Hit
AATAAAGATAATATGAGCAGGTATGTGTGCAACAATGTTCATCCCAGCAT10.6944444444444444No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GACTGTGTCTCACCGCCCACAACCCTATCGCTGGAGCTGTGAGAGGTTTT10.6944444444444444No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CTTCGGGGTAATTTCTCGAGGTCTTGGCCACGTTGCCGCGCTGGGTGATG10.6944444444444444No Hit
CCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTT10.6944444444444444No Hit
CTTTGGGAGGCTGAGGGAGGAGAATCTCTTGAAGCCAGGAGTTTGAGACC10.6944444444444444No Hit
TTTATGAACTGTAACACTCACCAGGATGTTTTGCAGCTTCACTCCTGGAG10.6944444444444444No Hit
TTTTAGTAGAGACGGGATTTCTCCATGTTGGTCCGGGTGGTCTTGAACTC10.6944444444444444No Hit
TCCAGACCGCCTGAGCGCGCATCGCCGCAAGACTCCGAAAGAGCAACAGG10.6944444444444444No Hit
ACGCTCCCGTTCCCGATATCTCTCCCGCTCCTTGTCCCGAGGTGTCTTGG10.6944444444444444No Hit
TTCTTGTTCTTTGACCCCAGGGCAGCGTTCACTGGCACCAGTGTCAACAG10.6944444444444444No Hit
ACTCAGGAGGCTGAGGTGGGAGAATTGCACTTAGTCAGTGCTAAGTCAGC10.6944444444444444No Hit
TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC10.6944444444444444No Hit
TACGGGGCTTTTTTCATGCCCAAAAAGCCCCTATAGGAGGCCACCACATG10.6944444444444444No Hit
CATCTGGAACGGCGACCCATGGCACAAGGCGACCTCACCCTACCTTTTCC10.6944444444444444No Hit
TGAATACCCCTAGAAACATGGACAGCATCTCCCCCAGCAGCAGGCAGGGG10.6944444444444444No Hit
GTACAAAAGAGAGGAGGCAGAGATGGTACACACTCATACAGAAGCTTCTC10.6944444444444444No Hit
GGCCCCGAGGCTCGTCACCGTGCTGATCGCCCCGCAAGCGACGGAAGCCG10.6944444444444444No Hit
ATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGCCGGGCAGCT10.6944444444444444No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTAGGCTGCGTTGATAC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CTTTCCTGCAGCCTGGAGGTGTCCAAGGATTCCCGTACAGTGACTGTGTC10.6944444444444444No Hit
GATGTAAGAAGTGAGTGTGGCTGGAGAAGCAAGACTAAGTCCAAATCAAA10.6944444444444444No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTCACACACTCAGTTGGTCCTGCAGCTAACACCACTGGGAATCAGTTCAC10.6944444444444444No Hit
CTGTCAGCCAGGCCTGGGGTGCAGTGGTGCGATCTAGGCTCACTGCAACC10.6944444444444444No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TTCTGAGAGCATGTTATTTCTCTTCTGGATCTAACCACACAGTCAAGCTA10.6944444444444444No Hit
CAGCGCCGAGGTTCTCAGGCCAGACGCTAGCTACGGCCACTGGGCCTGGG10.6944444444444444No Hit
AGACGAGGTTTTACCATGCTGCCCATGCTGGTCTCAAATTCCTGGCCTCA10.6944444444444444No Hit
TCGTTTATGAACTAGCCTATCGCAGACGGTATCAACAGGAACATCCTCGT10.6944444444444444No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGGCTT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
ATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTT10.6944444444444444No Hit
CCCCTAGAAACATGGACAGCATCTCCCCCAGCAGCAGGCAGGGGAAGGGA10.6944444444444444No Hit
GTATGAGCCGGGAGATGGCCATCTAGAGCCGATTCTTGGACTATTCTGTC10.6944444444444444No Hit
GCCCTGTCTTCTGGAAAGCATTACTGGGAAGTGGACACTAGGAATTGCAG10.6944444444444444No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACCTGTCTCTTATACACATCT10.6944444444444444Clontech SMART CDS Primer II A (95% over 21bp)
GTTATAATCGACCCGGGCTGCGACAATCGGCCGTATGCGGCGGTTGTTCT10.6944444444444444No Hit
TCATTAGATAGTCCCCAGTTGCCAATGCCTTCTCTGTTTCTGAGCTCAGC10.6944444444444444No Hit
ACTGGTGGCTGACCGCGGTCGGCGAGGTGCCTCAGCAGACGCTCAACGCA10.6944444444444444No Hit
AACCAGGGTCCTACAGACGCCTTCTCTTCGGGGGCATTTCTCGAGGTCTT10.6944444444444444No Hit
GTACATGGGGCTTTCACTCCGCGCTCACGGCGGCGGCCAAAGCGGCGGCG10.6944444444444444No Hit
CAACTACGAGCTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCT10.6944444444444444No Hit
TCCCAGTAATGCTTTCCAGAAGACAGGGCCTGGGAACATAAGACCTGGCT10.6944444444444444No Hit
GAAAAGAGACTGGTCACAGTTCTGTCCTTTGAAGTACCTGACAAAGAGTC10.6944444444444444No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGGTCAGGGCCCCCCACCCAGGAAAACCAACGGAGCCCTGAGACGTGTGT10.6944444444444444No Hit
GCTTGGGTCGCTGTCTACTGCTCCTTCATCAGCTTTGCCAACTCTCGGAG10.6944444444444444No Hit
CCCCAGTAGCAGCGCCATGGCCGGGTGGAACGCCTACATCGACAACCTCA10.6944444444444444No Hit
TAACAAGACGGCGCAGGTTGATGCTTCCAATAAACATGATCTTTCTGCTC10.6944444444444444No Hit
ATCCCACACCCCCGACCTGACCCTCAGCTAACCTGCAGACATTGTACATG10.6944444444444444No Hit
ATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTG10.6944444444444444No Hit
GTCAATTTTGGATCGCTTTGACTTCTCCAACACGGTTTGGCATCTCTGAA10.6944444444444444No Hit
CTCCTCAAGCATGGCCAGAGTGGACGCGGAGGCCAAGGAAGCGCTGAGAG10.6944444444444444No Hit

[OK]Adapter Content

Adapter graph