FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676553

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676553
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATTCTGACGAAACCTGGTTCCCCGCCGCGATGGTTGGTGTCCATACTC33.0303030303030303No Hit
GTATCAACGCAGAGTACATGGGCGCGGGGGGGATGCGTGCATTTATCAGA33.0303030303030303No Hit
CTTTATGTGCAATGGGGTCATAGGTAACATTTTAACTCTTTTCTTAGTCC22.0202020202020203No Hit
ATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATC22.0202020202020203No Hit
GCCCTACTCCACTCAAGCACTATAGTTGTAGCAGGAATCTTCTTACTCAT22.0202020202020203No Hit
CTCTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGT22.0202020202020203No Hit
TTGCGACACCCGTGGGTGCCTCGTGTTGGTTGCTCCACTGTTCTGCTGTA22.0202020202020203No Hit
GTCCCGCCCTTTCAGTGAGGATCCTAATTTATACCCCGAGTGTGGCCCCC22.0202020202020203No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA22.0202020202020203Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTACATGGGGGGTCGTTGGTGCGCGCGCAGAAGTGCAGGTGCTCGGTGAA22.0202020202020203No Hit
GGTTCAGTCTGTACTTACAAGATGGCATCTTGTGGCTGCATCCTCACACG22.0202020202020203No Hit
GTGGCGAATGCGGTGCTCGGCGAGGTGATCGACCAAGATCTCGTGAGGCG22.0202020202020203No Hit
ATACTATTCCACTCCCCCAGATGAGGAGGCTGAGGAGACCAGACCCCTAC11.0101010101010102No Hit
GATCATGCCACTTCACTTAAGCCTGAGCAAAAGAGCAAAGGTCCATCTCA11.0101010101010102No Hit
AGCTAGAGCAGATCGGTCTGGACGCTCGCGCGTACTCAGGCTTGCGGATT11.0101010101010102No Hit
TACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACC11.0101010101010102No Hit
ATCCTCCCGAGGTACATGACGGCCACACGATCGGAGATGTGGCGCACCAC11.0101010101010102No Hit
CAAACCAAGTAAAGGCTGTTCCTAATTGGAGCTTTTTACTGAGCGTAGCA11.0101010101010102No Hit
GAAGAATGGCCAGCAAGATGCTCTAGCCTGCAGAAAAGTCACTTTAGCAT11.0101010101010102No Hit
ACTTTAAGGTGCCCAAAGAGGAGTTGCAAAAATCGACTGATAATAGTCTA11.0101010101010102No Hit
ACCGGATGGTGAGGGCAGGGGCATCTGGCCCAGCGTGGACTCGGGCCATA11.0101010101010102No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.0101010101010102Clontech SMART CDS Primer II A (96% over 26bp)
CCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAACTACG11.0101010101010102No Hit
CGCGAAGGTCTTCCGCATTGCCGGTGGCCGGCTGGCGCAGCCGCTCCACC11.0101010101010102No Hit
TGTTGAAACACCGCGCCGATGTGCGGGTGGACTTCATCTACGAGAAGTTC11.0101010101010102No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGA11.0101010101010102Clontech Universal Primer Mix Long (96% over 26bp)
GTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCTCTTTCAACTTTT11.0101010101010102No Hit
GTACATGGGAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGC11.0101010101010102No Hit
GCCTCGATCTGGGCGGGCAGGGCGTCGAGCTCGCGCTGCTCCTTGTACGA11.0101010101010102No Hit
TGCCCTGTATGAGGTTCCGCAACGACGTCGTCGACGTCAACCCCTCAACC11.0101010101010102No Hit
TCATTCCCCTGGCCTCTCCGCACACGCTGCACGCGGGCGGCCAGCTACCG11.0101010101010102No Hit
GAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCTGGCCTG11.0101010101010102No Hit
TTATCACAGCTTGGTACCTGCACAGGGAGCTTTGTGCTGGTTCTGAAAGG11.0101010101010102No Hit
CCTGAATACAGCACACTGATGGGTCTTGACTCTTTATCCAATTTGCCAGT11.0101010101010102No Hit
CGGTAGTAGGGGAGTGACTCACCCACAAAGACTGGCACATCACCCCAGCG11.0101010101010102No Hit
CAGCAACAGAGTGCAACACGACGTCTATGAATTACTAAGAAGTACAACTC11.0101010101010102No Hit
GGGCGGCGGGGATGGCTCCCCCCGCGTCCTGAGGCCTAGTCTTGGGAGAC11.0101010101010102No Hit
ACCTCAAGGCGGTCGGCATCGACGGGCTGGTGCTGCCGTTCGAGGAGGAG11.0101010101010102No Hit
GAATCTGGATGAAGTTGTAATTTTAGTCAATTCACCATTCTCTCACTTTT11.0101010101010102No Hit
GGCAATAAATTGACTCAGTCAGCCCAGGGATCACCCATTGTATTTCCTCG11.0101010101010102No Hit
GTACATGGGAAGCCGACTGAGTTCCTTTCCTCATGGGGACCCAGTGTGCG11.0101010101010102No Hit
ATCGACTACAGCTTTGTGCGAGTGTGTGAAAAATCCCAAGAAACCAGCGT11.0101010101010102No Hit
ACGCGGGCGTTGTCCGCGGCGTCGCCGCCCTGGAGGTCCTCCGCGCGACT11.0101010101010102No Hit
AGTAATGTTACTCTCTAGCCTCTAGGGGAGCCATGCAGCAGGGATAGTAG11.0101010101010102No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTCGTCACAA11.0101010101010102No Hit
CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAA11.0101010101010102No Hit
GCCACATCCTGCTCTCGCGGCGCGTGGCCGACAGCGGCCTGTACCCGGCC11.0101010101010102No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTGCCGACCCC11.0101010101010102No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTCGCTGGGTAGTAG11.0101010101010102No Hit
AAAGGAACCACCCGATGAGCAAAAAGACCGTCGTCCTGACCCCGGATGCC11.0101010101010102No Hit
TTACTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCAT11.0101010101010102No Hit
CCAGCTGGCAAAACAAGACACAGCTGGCAAGATTTGCGAAGAAAATACGG11.0101010101010102No Hit
TAATTAAATAAATCAAAGTTTCCGTCGTTGTCTTCAACGTAAGGGAGGGA11.0101010101010102No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG11.0101010101010102No Hit
CCTTTGTGATGTGTGCGTTCAACTCACAGAGTTTAACCTTTCTTTTCATA11.0101010101010102No Hit
GTATTTCTCTTCCCTCTAAATGTTGCCACGGGGTAAAAGAAGTAAAGTTT11.0101010101010102No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.0101010101010102Clontech Universal Primer Mix Long (96% over 26bp)
GTAGTCACTGTGTTGAACTGAACAAAAGAATACTTTGGCCAGGCCCAGTG11.0101010101010102No Hit
GCACTTGGCCTGTTTTTAAGTCTCCCTACAACACAGAGTTCACTGGAAGG11.0101010101010102No Hit
TGGTCTTACTTCAGGTCGAACCGATCGATGCCGAGGGTCCGGACTGTCTC11.0101010101010102No Hit
AGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCC11.0101010101010102No Hit
GGCGCTCGGAATCAACATCGACGTGAGACGTCGGCTCATCAAGCAGCAGG11.0101010101010102No Hit
GCCGAAGACTTCGATGCTGCCTTCGTCGGCGACATAGTGGCCGAACAGGA11.0101010101010102No Hit
AGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGCCAGTAT11.0101010101010102No Hit
CTTCGAAGCCATGCCGTCGACCGACGCATTGCCGAATGCCAGCACGCGCT11.0101010101010102No Hit
AGTATGATCTGTCCTCGGTTACCGATTTCGCGGCGGGCGGCGCGCCACGC11.0101010101010102No Hit
AAACTGATGGTTTTTTAGGCGAGGGAGGGGAACGAGATGAGAATAGAAAG11.0101010101010102No Hit
GCCCAAACCAGGAGGCTTCATTAGACCCTTGACATGCAGAATATTTCTTA11.0101010101010102No Hit
GCCAGGAACTGGCCGATCTGGCCGTGCCCCTGCTCGCCGACTACGCCGCC11.0101010101010102No Hit
ATCCGGTGACGGTGCCGCGCCTGCAGGAGGAGCTGGGCCTGTCTCTTATA11.0101010101010102No Hit
CCACATGGGCGTCTGGTAGACACGGATGCCACATACGCTGTCTCTTATAC11.0101010101010102No Hit
GCTACTCGGGAGGCTGAGGCAGGAGAATGGCTTGAACCTGGGAGGCGGAG11.0101010101010102No Hit
GCTGGAGTGCAATGGTGCGATTTTGGCTAGCTCGAACCTCCACCTTCCAG11.0101010101010102No Hit
ATCAAATCCAGGGAAGTCAGTCACAGTGCCTCTGAGAACCTGTGCCATGG11.0101010101010102No Hit
TCGCTGCATAATCCGTGGCGAACATTGTCGCCATCCAGCAGATACGTACT11.0101010101010102No Hit
TCAGTCATCTTTACTAATTGGCACACACTTGAGCCCCACATTTTTCCAAA11.0101010101010102No Hit
GCTCCATAGGGTCTTCTCGTCTTGCTGTGTTATGCCCGCCTCTTCACGGG11.0101010101010102No Hit
GCTAATTTTTTTGTATTTTCAGTAGAGATGGGGTTTACCCTGTTGGCCAG11.0101010101010102No Hit
CGCCTTTCGCTTTCCGCTCTGCTTATGCTGTGCCTCGCAGCCTCGGCCGA11.0101010101010102No Hit
ATACACATCTCCGAGCCCACGAGACCTAATCAAGATGATCGCGTATGCCG11.0101010101010102No Hit
TTGTTTGTTTGTTTTGACACAGAGTCTTGCTCTGCCGCCCAGGCTAGACT11.0101010101010102No Hit
GTGTAGAAGCCATACCTGTTGCGGCGGCCCGCATGGCGCTCGTCGATGCG11.0101010101010102No Hit
AGGATGCAGATACCATGAGCGGCTTTAGAGATGTGATTCAGGAACGCTGC11.0101010101010102No Hit
CATCGTGGATCACCCGCACCTTGCCGGCGCCGATGCGCTGACCGATTGCG11.0101010101010102No Hit
ATCCTGGAGTTCTCAATGGTGGCACCAAGAATCTTGTCCCGCAGGTCCTG11.0101010101010102No Hit

[WARN]Adapter Content

Adapter graph