FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT33.0303030303030303No Hit
CGCGTGAAGATCGCCGGCCGCGTGTTCAGAGGAATCGTGAAAACAACAGC33.0303030303030303No Hit
CCTCAAGTGATCCGCCCGCCATGGTCTCCCAAAGTGCCGGGATTACAGGC22.0202020202020203No Hit
CCTCATGGACCGGCTGGAGCTGCCCTGCACGCCCGCCGGCTGGGCGCGCG22.0202020202020203No Hit
GTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGG22.0202020202020203No Hit
CCGGTTGTACAGCGCGATGCCGTGCTTCAGGCCGTGCTCGGTGAGCCGCG22.0202020202020203No Hit
GGTCTGTCTGATTTCAAAGCTCATCATTATGGTTTGAATGTTTGTGCCTC22.0202020202020203No Hit
CCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGA22.0202020202020203No Hit
ATTCGCCATACTGGCACAAGCCTTGCGGTAACAAGGCACGCTCTAAACTG22.0202020202020203No Hit
ATGCTAGGCTGCCAATGGTGAGGGAGGTTGAAGTGAGAGGTATGGTTTTG22.0202020202020203No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA22.0202020202020203Clontech Universal Primer Mix Long (96% over 26bp)
GTGTACAAAAGACCCAAACCAACCCTGTCTTGATGAGGGGTTGGCTTTAA22.0202020202020203No Hit
GTATTTGCCATCATAGGAGGCTTCATTCACTGATTTCCCCTATTCTCAGG11.0101010101010102No Hit
AAATCGGGTCGAACACCCCATTCAGCCAAAGCGTTGATAGTCGAGTCGAA11.0101010101010102No Hit
CTTCTCAGTTGGCTTCAGGTGTTCATCTTCTTTCTCTGGCCCCTTAAAAG11.0101010101010102No Hit
TCCGGACCCTCGGCATCGATCGGTTCGACCTGAAGTAAGACCACTGTCTC11.0101010101010102No Hit
CACTTGCAGCGGTAGCTGGCCGCCCGCGTGCAGCGTGTGCGGAGAGGCCA11.0101010101010102No Hit
GGCGTGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCG11.0101010101010102No Hit
AGATAATGCACCAAAACATTTTGGTATCTAATTTAAAAATATCATGCTGA11.0101010101010102No Hit
CCTTCGCCGATTGCATAGGACTGCATCATGTAATGCCAGCAGACCCAGGC11.0101010101010102No Hit
CACCAGCATCACACAAACACATGAGTAAGGCATTGTGCTACAACATTGCA11.0101010101010102No Hit
GTATCAACGCAGAGTACATGGGAGTCTAGGTGCAGCTGCCGGATCCTTCA11.0101010101010102No Hit
GATTCGGAGGGCCGGCCGGGCGACCCGCATGCGATGGCGGCGCGCCTGTG11.0101010101010102No Hit
CAACTATAATTACCATGTTTTTTCTGTGTGTACTTGTTTGCTCTCTAACA11.0101010101010102No Hit
TAGCCATCCGGTCACTGTGCAACAACGCGAGCTACACCACGGTCATCGTG11.0101010101010102No Hit
GGATTAATTTCAACGAGAAGGCGATCCATAAGGAGGGCTGTGTGGAGAAG11.0101010101010102No Hit
AAGCAGCAATGGAGGAAGAGTCTGACGTTTGTGTAGGGGTACAGTTCCCT11.0101010101010102No Hit
GAGTTGCTCGACCTCGTCGGGCTTAACCCGGAGCACATCAACCGCTACCC11.0101010101010102No Hit
GAACTGGTGCAGCGCTGGGGTGATGTGCCAGTCTTTGTGGGTGAGTCACT11.0101010101010102No Hit
TGCCCGTACCATCCAGGATCGCGAGATCAACCAGGGGTGCCGATGCGCGG11.0101010101010102No Hit
AAAACACACAGTAAAGAAGGTAATTTTTTCCAGCTGTGTAGTAGTTCTAT11.0101010101010102No Hit
TCGTGGCCCAAACAGTAGGAAAAAATCACGGTTACCCCGACGGATTCATG11.0101010101010102No Hit
TGGTAATTTAGTGGCATTAAGATGAGCTTAGTCAGCCAGGAGGGAAGGGG11.0101010101010102No Hit
CTCCAGCGCTACCGTGATGGAGCGCTACCTGCTGAAAGAGAAGGGCACCG11.0101010101010102No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT11.0101010101010102No Hit
GTCTTTACAGCTAAGTGGATTTACAAAGCACATCCTCCCCAGAGCTCAAG11.0101010101010102No Hit
CAGATGTGGGATGCATTACGACGAGCTGGCGTGGCCGACGAAGTTGAGGC11.0101010101010102No Hit
ATCTGGAGGCTATGGGAACACTTGCTACCAAGTGATAAGACTCCCATGAG11.0101010101010102No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.0101010101010102No Hit
GTCTAATAGAAAACAACCGAAACCAAATAATTCAAGCACTGCTTATTACA11.0101010101010102No Hit
CACAACTACGAAGCGGGGTTCTATTCAAACTTTAAGAACTTCATAGGCGA11.0101010101010102No Hit
ACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG11.0101010101010102No Hit
CGTATGTGGCATCCGTGTCTACCAGACGCCCATGTGGCTGTCTCTTATAC11.0101010101010102No Hit
GTACTGAATCCTGCAGGCAATTGTAATATAAATCACTAGGTGACAGAAAT11.0101010101010102No Hit
CCCTTAGAGCAACCCATACAACCAACAGGCTGCGTACACTACCAAGGAAG11.0101010101010102No Hit
GATGTTTATGTCAAGAAAATCAATCCATATGCTAATAATTATATTAATTT11.0101010101010102No Hit
CGTTATTATGATTGACATTGTTAGCCTCACTTCAGGTTTGATGGGCCATG11.0101010101010102No Hit
TTATCGATGTTTCGTTCCATGAGATCGTCGAAGGTTAAGAAGAAACGTAC11.0101010101010102No Hit
CTTTACAAACAGAGTGTTTCCTAACTGCTCTATGAACAGAAAGGTTAAAC11.0101010101010102No Hit
GGTATCAACGCAGAGTACATGGGCCGTGGCGGCGACGACCCATTCGAACG11.0101010101010102No Hit
ATTAGAGGCACCGCCTGCCCAGTGACACATGTTTAACGGCCGCGGTACCC11.0101010101010102No Hit
GCTCAGGTGATTCTCTCACCTCAGCCTTCCAAGTAGCTGGGATTCTAAAT11.0101010101010102No Hit
TGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATGAACGAGATTCCC11.0101010101010102No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTAT11.0101010101010102Clontech Universal Primer Mix Long (96% over 25bp)
TGCTAGGATTACAGGTGTGAACCACCGCGCCTGGCTACTCTATGTTTACT11.0101010101010102No Hit
GCCGCCGGCTCCTGCGCCCGCTCCTGCCGCCGAACCGGCCGCCCCGAAGG11.0101010101010102No Hit
AACCAGTCTGGCCAACATGGTGAGACCCTGTCTCTACTAAAAATACAAAA11.0101010101010102No Hit
TGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTG11.0101010101010102No Hit
GCTGAGATGACTTTTAATTAAGGGGGGTGGGGGAAACACCAATTGGAAGA11.0101010101010102No Hit
AAGTAGAATAGAGGCTGAGGCAGGAGAATCTCTTGAACCAGGAGGTGGAG11.0101010101010102No Hit
GCCCAGCTCCTCCTGCAGGCGCGGCACCGTCACCGGATCTGTCTCTTATA11.0101010101010102No Hit
CCTCCCCGGGTCGGGAGTGGGTAAGTTGCGCGCCTGCTGCCTTCCTTGGA11.0101010101010102No Hit
GCCCTCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCG11.0101010101010102No Hit
CTGCGGCGCGAGCTGATGGCGCGCGTGAGCCAGTTGAGCGCCGTCGAGCA11.0101010101010102No Hit
CTGGTGGCGTTAGTCATTGCCAGAAGTTTGCCCGGATGCTGGAATCTCAC11.0101010101010102No Hit
CGCGGCCTCCCGCCAGCACTCGGGGGTGCAGGGCCCTGTGGTTGGACTTC11.0101010101010102No Hit
CCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAAC11.0101010101010102No Hit
ACCTCAACGACCGCCTGGCCTCCTACCTGGACAAGGTGCGCGCCCTGGAG11.0101010101010102No Hit
GTGGTGAAGGGCACTTAACCATTCCAAATCTCCTCCCTGCATCTTTGGCT11.0101010101010102No Hit
CGTCCTCGCCGGCCAGGAGGCGCATGAGGTGGGTCTTGCCCGAGCCGTTC11.0101010101010102No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCA11.0101010101010102Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCCTTGTTCTGTCTTTCCCTTAGTCTGTGCATCATTCATGTCCCATGTAC11.0101010101010102No Hit
GTTCCAGGACGTGAACGTGGCCGCGGGCCGCGTGCCGGTGCTGGATCTGG11.0101010101010102No Hit
GAGTCATTTTGCTCAGAAGAAACAGCATGTGCAAATGTGCCACAACCATT11.0101010101010102No Hit
GTCCGCGAGGACGTGCTCGACCCGCAGGACTTCGGCATCGGCCGCAGTCG11.0101010101010102No Hit
GTCGGGTAACCGGACTCGCGGTTCAGCCACAGGTCGATCTGACGGGCGGC11.0101010101010102No Hit
CTTCTGCACCAGGCACATTTGCAGAACGTAGAGAATCCCGCCCGTAGCCT11.0101010101010102No Hit
GGGATTCCGGGATCCCTTGGTGGATCGAGGCCAGACCGGCCCGCCGGAAC11.0101010101010102No Hit
GTTCCCGACCAGGCCGCCCGTACCATCCAGCGTGCGCTGTCGGGCCTTCG11.0101010101010102No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA11.0101010101010102No Hit
AAATCATCCCGGGTGGTCAGATACACCCGGAACATCAGCACGTCCTCCAC11.0101010101010102No Hit
CTCTACTCTCAGTTTACTGCTAAATCCACCTTCGACCCTTAAGTTTCATA11.0101010101010102No Hit
CGAGCAAAATCACCAGCTAACATCATAATGACAGGATCAAATTCACACAT11.0101010101010102No Hit
GCCTGGCTGTGCGGGAGATCTGCGGCCTTGGCAACGTCCTGGCCGAGGAA11.0101010101010102No Hit
GGTCTGCAGTCACCGTTGTGAGCTCACACAGAGATAATTCATAATGAAGC11.0101010101010102No Hit

[WARN]Adapter Content

Adapter graph