FastQCFastQC Report
Fri 10 May 2024
EGAF00003676582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Total Bases1.1 kbp
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTCTCTGGTGCAGGTAGTTTGAGTTTCATAACGAATAAGACGAGACTG327.27272727272727No Hit
GTGCGAGCTCACGTTGATGCACCTTTTGGGCACCACGCATTACAGACAAA218.181818181818183No Hit
TATCGTCATGGAGCTCATTGACGGTCACACCCTGCGCCTGTCTCTTATAC218.181818181818183No Hit
CCTCACGGGTGCGCGCCGCGGAACCCGGGACCCGGTGGAAGCGCTGGAAC19.090909090909092No Hit
CCTCACGGGTGCGCGCCGCGGAACCCGGGACCCGGTGGCAGCGCTGGAAC19.090909090909092No Hit
ACATTGAATGGAATGGGTGGACTAGAAGCTGCAGATAAGAAAGAGGATGC19.090909090909092No Hit
TATTATATACTGTACATAAAATATCAAAGTACCCAAGGTATATATCTGTC19.090909090909092No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)