FastQCFastQC Report
Tue 10 May 2022
EGAF00003676801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9471
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGACTGCGATAGGAATCATGTCTGGTCGCGGCAAAGGCGGAAA220.23228803716608595No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190.20061239573434694No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG170.17949530144652096No Hit
TCCTTGAATTCAGCAATCTGTTCTTCGGTCAGCTGATCAGCCATGGTGCG160.16893675430260796No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT160.16893675430260796No Hit
GTACATGGGAGGCTCCCGTGCAGGCAGCAGTGGGACATGGCGAACTTGGG110.11614401858304298No Hit
CTTTATTCTCGTGAGAGGGGAGGACAGCAGAGGGAGTCAGGGGAGGGAGA110.11614401858304298No Hit
GTACATGGGAGTCCGAGCGCCGCGCTGGGGAGAGCGGGTGTTTGAAGGCT100.10558547143912997No Hit
GTATAGGTGACGGCGTCTCGAATAACGTTCTCTAAGAAAACCTTAAGCAC100.10558547143912997No Hit
TCGTCAGACAGGTCCTGTAGTCACGGCCCAGCTCCTGTGTTTTGGTCAAC100.10558547143912997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)