FastQCFastQC Report
Tue 10 May 2022
EGAF00003676802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9471
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT370.3906662443247809No Hit
GTACATGGGACTGCGATAGGAATCATGTCTGGTCGCGGCAAAGGCGGAAA320.3378735086052159No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT150.15837820715869497No Hit
TCTTGACTCAGAGTGCTTTTAGTGCTGCTTCCTCCTGAAGGAACATCCTT140.14781966001478197No Hit
TACTACATCCATGGCTGTGACAGTTTTGCGCTTGGCGTGCTCCGTATAGG140.14781966001478197No Hit
TTCTTAGATTCAGCCGCCGAAGCCATACAGAGTGCGCCCCTGACGTTTCA130.13726111287086898No Hit
ATCCATGGCTGTGACAGTTTTGCGCTTGGCGTGCTCCGTATAGGTGACGG120.12670256572695598No Hit
GTACATGGGAGTGGTGCTGGGAGTGTCGTGGACGCCGTGCCGTTACTCGT120.12670256572695598No Hit
GTATCAACGCAGAGTACATGGGACTGCGATAGGAATCATGTCTGGTCGCG110.11614401858304298No Hit
GTTCTCAGGAGACCGCGTATTCTTAGATTCAGCCGCCGAAGCCATACAGA110.11614401858304298No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT110.11614401858304298No Hit
TCTCAGGAGACCGCGTATTCTTAGATTCAGCCGCCGAAGCCATACAGAGT100.10558547143912997No Hit
GTATCAACGCAGAGTACATGGGAGTCCGAGCGCCGCGCTGGGGAGAGCGG100.10558547143912997No Hit
GGATAAGATCAATGCCCTCATTAAAGCAGCCGGTGTAAATGTTGAGCCTT100.10558547143912997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)