FastQCFastQC Report
Tue 10 May 2022
EGAF00003676804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9742
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT350.3592691439129542No Hit
GTACATGGGACTGCGATAGGAATCATGTCTGGTCGCGGCAAAGGCGGAAA340.34900431122972697No Hit
TCTCAGGAGACCGCGTATTCTTAGATTCAGCCGCCGAAGCCATACAGAGT190.195031820981318No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT180.18476698829809074No Hit
GTACATGGGAAGCTGCAGGCTCCCTGCCCATAAAACAGGGTGTGAAAGGC170.17450215561486349No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG160.1642373229316362No Hit
GTACATGGGCCCGCCCCTCCGGCTAGCTCGCTGGCTCCCGGCTCCTCCCG120.12317799219872716No Hit
GTACATGGGGAGGGTGTGAAAGGCATCTCAGCGGCTGCCCCACCATGGCT110.11291315951549989No Hit
TACTACATCCATGGCTGTGACAGTTTTGCGCTTGGCGTGCTCCGTATAGG110.11291315951549989No Hit
GTATCAACGCAGAGTACATGGGCCTTCCGCCACGGCCGTCTCTGGAGAGC110.11291315951549989No Hit
ATCGTAAGGTGCTCCGGGATAACATCCAGGGCATTACAAAACCGGCTATT100.10264832683227264No Hit
GTATCAACGCAGAGTACATGGGACTGCGATAGGAATCATGTCTGGTCGCG100.10264832683227264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)