FastQCFastQC Report
Tue 10 May 2022
EGAF00003676818

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676818
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7371
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT360.4884004884004884No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT200.271333604666938No Hit
GTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGCCGCGCGCCTC160.2170668837335504No Hit
GTACATGGGAGAGCTCGGCGGCTGGGACTGGAGGACAGCGGTGGCGGAGG160.2170668837335504No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG160.2170668837335504No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA150.20350020350020348No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT120.1628001628001628No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA110.1492334825668159No Hit
GTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCCCTGCTGTCAT110.1492334825668159No Hit
CTTCTGGCTGACAGCACAAGAGAAACTCCTAGTTTAGACAACTGGTAAGC100.135666802333469No Hit
TCTTTGCATTGTTCCTCATCCGCCTCCTTGCTCGCCGCAGCCGCCTCCGC100.135666802333469No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG100.135666802333469No Hit
CTCCACAGATACCCCGAAGCCATGGCAAGCAAGGGCTTGCAGGACCTGAA90.1221001221001221No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG90.1221001221001221No Hit
GTACATGGGAGAGCGCGCGAGCCCGGGGCGGGCGGGGCGCGTCCCGGAGG80.1085334418667752No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA80.1085334418667752No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT80.1085334418667752No Hit
TCTCCTTGCTGTCCTGTAGGATCCTCTCCTGCCAGCGTTGGGGCTCCCCG80.1085334418667752No Hit
GTACATGGGAGTGCGGCTCTGGGCTGGCCGAAGGGGTGGCGCTGCGATCC80.1085334418667752No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)