FastQCFastQC Report
Tue 10 May 2022
EGAF00003677143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41765
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAGTGCATTAAAAAAGAAGCCACTGAAGACAGGCTTAAGCAT1050.25140668023464624No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG790.18915359750987668No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT700.16760445348976416No Hit
CGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT510.12211181611397103No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT510.12211181611397103No Hit
GTGTTGGAAATGTCATGACAATGCAGTGCTGCACAGCAGCAAAACTCAAT460.11014006943613074No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG460.11014006943613074No Hit
ATATTGAGGAGTGCCTCAGCAGCCTCAATAGTTTCAATTGTTTCATCCCC460.11014006943613074No Hit
GTACATGGGAGACCAGCAGGAGACAGAACCTTCCAGAAGTGGGCAGCTGT450.10774572010056266No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT440.10535137076499461No Hit
GTACATGGGAGTGTACAAGGCAGCCATGGTCTACCTACTGCTTGACACTT420.1005626720938585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)