FastQCFastQC Report
Tue 10 May 2022
EGAF00003677146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41340
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG980.23705853894533138No Hit
GTACATGGGAGTGCATTAAAAAAGAAGCCACTGAAGACAGGCTTAAGCAT880.21286889211417515No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT740.17900338655055636No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA580.14029995162070635No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT580.14029995162070635No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC580.14029995162070635No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT480.11611030478955006No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG470.11369134010643445No Hit
GTGTTGGAAATGTCATGACAATGCAGTGCTGCACAGCAGCAAAACTCAAT450.10885341074020319No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT450.10885341074020319No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT430.10401548137397194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)