FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003677148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGGCTGCCGATGTTAATCAGGCGAAGGCGCACGCGCTCCCCTTCCTTC34.3478260869565215No Hit
CCGTACCACCGCTACCGCCCGTTCCACGAGCTCGTGGAGGACGTGTCGCT34.3478260869565215No Hit
TCCTCATCCCGGCCAGTTTGGCTGCCTTCACCCTGATCCCACGCCCTCAA34.3478260869565215No Hit
CCTACTGGTCACGGCCACGGCACTACGCGAGTCGGTCGGCGCCCCACTGC34.3478260869565215No Hit
GCCGTGATGGCCGCGCAGGGCACGCAGCTGACCAACAAATACGCCGAAGG22.898550724637681No Hit
GGGCGGGCTGTGGACGGGTTCGCGCATCAGTACACGCCAGCAGGGCGAGG22.898550724637681No Hit
ATGAACAACAGTACTGAGATTATCCCGGACATGCTCTCAACTGACACTCA22.898550724637681No Hit
CCGCATGGTCAAAGTGCGGGCCGCTGTAGGTTACCAGCCCCGTCTTGGCG22.898550724637681No Hit
GGCTTCCTCGGCGGCGCGCTGGCCGCCGCGGCGGTCTACGCGATCTGTCT22.898550724637681No Hit
GAGAAGCTGCACGCAGTGAATCCTTACCCGGAAACAGGCTGTTGATGTGG22.898550724637681No Hit
ATCTTCTGTATCCGGCGGAATTGATCACAGCATCAGATGTCATTCTTTAA22.898550724637681No Hit
CATCAACACCGGTAAGGAATGCAACGCCGCGGAACATTTTGACGTTCTCG22.898550724637681No Hit
GAGGGAAACCGTTTGTCCGGAACCCGGACCGTGGGGTTGCCGTTTCGGTC22.898550724637681No Hit
CGGAAGATCGGCGCGGGCAGCAGGTGCACCTCGTCGTAGATGACCAGGCC22.898550724637681No Hit
GAATAGATGTTCTGGTTCCGGGAACAGCACACGGTCCTGCGTGAACGCGG11.4492753623188406No Hit
AACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTT11.4492753623188406No Hit
GGATTGTACCGGCTGTTCCGGGAGCAATTTTCCCGGGCGGACATCCCCAT11.4492753623188406No Hit
ATCCCCGCCTCTCCGAGAAGCAGCGCAAGGCGGCCACCGAGGTCAGCACG11.4492753623188406No Hit
CTCCAGGCCGTGCTGCTCCCGTCGGCCAACAACATGGCGCGGATCCTCGC11.4492753623188406No Hit
GGCCAAGAGCGCGGGTTCGTGGTCCACGTGCACGCGGGCGATGCCGCCAA11.4492753623188406No Hit
GGGCCGCACAGGCCATCCGTGCCCCGACGCTGAATGAGGCCGACTGTCCA11.4492753623188406No Hit
GTTGTAGGTGTTGCCTACACCAGTAGACAGCCCCGCCCGACCTCTTCTCC11.4492753623188406No Hit
ACATCCAGATCTTTATGCAGGTTAGTTAAACCCACATTATTAACGAGTAC11.4492753623188406No Hit
ACCTCCCCGCCGCCCGCGAGGCCTATGCTCAACTAGACACCATCGCCTCC11.4492753623188406No Hit
CTTGTTGTGCCGGTCGGGCCGGTTGCGCAGGCTGAGTTGCGCCACGGCGC11.4492753623188406No Hit
GGATATGGGGGTCGCCGGATGGATCATCACCGCCATTTTCCCCATCTGCG11.4492753623188406No Hit
GCTTCACGCCGTGCCGGGCGAGGAACGAGTCCTTCGCCTGGGCCCGCAGC11.4492753623188406No Hit
ATAAAGGGGATTTGCAATTCTTCAGCTAACCTTTTGGCTAATATCATCGT11.4492753623188406No Hit
GCATCGTCGTCATGATCGGAGCCGACAGCCGATCCGCCAGTGTAAGAAGC11.4492753623188406No Hit
GGGTCGGGATCGACGAACAGGATCGTCAGATCCGATTGGATGCTCACGCG11.4492753623188406No Hit
GTTCGCCTGTCCTTCGCGGGCTGGACGGGCAGGGTTGATCCGGGCAGCCG11.4492753623188406No Hit
GGAAGCGTTCTGCTGCATCTCCAGTGCGGAGGTGGCAACGCCACCGGCGT11.4492753623188406No Hit
CGTTGATCCCGCGGTCGACCATCCGCTCGGAGATCCAGTCGACGGCCATG11.4492753623188406No Hit
ACACCGTGGCATGCTCGAGCATGGCCGTGTGGTCGCTCTTGATCATCCTT11.4492753623188406No Hit
AGCTTACCTTGAGCCTGATAAGGCAATTCAGAAATCTCATCTAAAAACAA11.4492753623188406No Hit
ATATCACTGGAGAGGGGAAGGTCCAATGACGCGCTCCATCAACCCCTTTT11.4492753623188406No Hit
ACATATTGCTCATCATTTGGGTTATTTGTTCGTGGAATTTAACAAAAAGG11.4492753623188406No Hit
CATCAGGACCAACTAATGGATTTTGGACATCCGACGCAATCAAAAATTCG11.4492753623188406No Hit
CCGAACGCCGGGGTCACGCGGGACAGCGATGCGATCAGATCGTCATCCGA11.4492753623188406No Hit
TCACCCTGATCTCCGGGGCCGACGCACCGGCCGGTCTCGTGGAGGCGGTG11.4492753623188406No Hit
CAATGTTTCGCACGCGGGTCACTCCCCTACGCTACCGCGTCCGGATCGGC11.4492753623188406No Hit
TATCTTTGGTTTCCGGGGTGGACGAGATACAACCAAAAGGGCTGAAATGG11.4492753623188406No Hit
TCCGCACCCTGGACCAGCGACCGGACGACCTTCCGCTGGTGCGGGTGGAC11.4492753623188406No Hit
GTACTGATCGAGCGGCACATACCGCCGCTGGCCGAACCGTGCCCGGACGG11.4492753623188406No Hit
GTACGAGAATCCCTCGCCCGATCCCTGCAGTACAGCGGCTACGAGGTCGA11.4492753623188406No Hit
ACATGAAACGGTTGGCTCATGCTAAAGTCAATCATTACGAAAAAACCTCC11.4492753623188406No Hit
AGTTCAGCGGGGAGGCGCCGGTGCCGCCGTCGTGGCCGGAGATCAGGATG11.4492753623188406No Hit
ATTCCCGGAAGAAGCTCGTTACTTCCAAAATAAAGGAGCCAAGGTTACCT11.4492753623188406No Hit
TTCACCTTGTCCCCCATCGCCTCAATCACTTCGGGGCGCGGACCGATGAA11.4492753623188406No Hit
ATTTTGCTGCATAGATTTCCGTCGCCATATCTGCTAGCATATGCTGAATT11.4492753623188406No Hit
GGATAATGCCAAAAAGGTGGTGGAGGTAGACCTGAACCTCAAGGGCACGC11.4492753623188406No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)