FastQCFastQC Report
Tue 10 May 2022
EGAF00003677637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17912
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA5923.3050468959356856No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT3752.0935685573916927No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT350.19539973202322464No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG320.1786511835640911No Hit
GTCCAGGCACTGCTGCCCAGCCTCCAAGCTCCATCTCCACTCCAGATTTT300.16748548459133542No Hit
GTACATGGGAGTGGCTGCATTCGGCGATACCGCTGGCCGATTCCACCACG280.15631978561857973No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT270.15073693613220188No Hit
CCTTAATATATTCGCTGGTTTAACTGACGAAGCTCAACATGCTGAAATCA250.13957123715944617No Hit
GTACATGGGTTCGGCCTGGGGAGCAGCCGACCCGGTACCCGGTCTGCTGG230.12840553818669048No Hit
GTACATGGGGAGACGAATTGCCAGAATTATTAACTGCGCAGTTAGGGCAG230.12840553818669048No Hit
GTACATGGGTCGACGCCGATCCGTACCTGGTCCACCACGAAGTGGACGAT220.12282268870031264No Hit
AATATGTACTTCCCGTTTCGGGACCACCAAGCTCTGGGGACTGGAATGCA220.12282268870031264No Hit
ATGTTAGCCCCATAATTTTTTTTTTCCTTTTAAAACACTTCCATAATCTG210.1172398392139348No Hit
CTCCCTACCCATTCCTGCCAGCTCTGCCTCCTTTTCAACTCTCCACATTT200.11165698972755694No Hit
GTACATGGGTGTTTGTATATGCTAAGATCGCCATCATCAAAGGTTATGAG200.11165698972755694No Hit
CTTCCATAATCTGGACTCCTCTGTCCAGGCACTGCTGCCCAGCCTCCAAG190.1060741402411791No Hit
GTACTATGTTAGCCCCATAATTTTTTTTTTCCTTTTAAAACACTTCCATA190.1060741402411791No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC190.1060741402411791No Hit
GTACATGGGAAGATGGACACTGGGCCACCCTCCCAGGCACCAGACACAGG190.1060741402411791No Hit
GTGTTAGGATTAGGTATATATTTTAAAAGGCATGGCTGGGTGCGGTGGCT180.10049129075480126No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT180.10049129075480126No Hit
GATCTATACTACCCAAAGTGATCTACAGATTTAATGCAATTCATGTGAAA180.10049129075480126No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG180.10049129075480126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)