FastQCFastQC Report
Tue 10 May 2022
EGAF00003677638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17912
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA5483.05940151853506No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT4012.2387226440375168No Hit
GTACATGGGAGTGGCTGCATTCGGCGATACCGCTGGCCGATTCCACCACG510.2847253238052702No Hit
GTGTTAGGATTAGGTATATATTTTAAAAGGCATGGCTGGGTGCGGTGGCT320.1786511835640911No Hit
GATCTATACTACCCAAAGTGATCTACAGATTTAATGCAATTCATGTGAAA310.17306833407771327No Hit
GTATACGGGCTCGAATCGCCACCGTGGGCCCTGTTCCTGCCGTGCCCCTG300.16748548459133542No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG280.15631978561857973No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT280.15631978561857973No Hit
GTACATGGGACTCTCCCTACCCATTCCTGCCAGCTCTGCCTCCTTTTCAA270.15073693613220188No Hit
GTACTATGTTAGCCCCATAATTTTTTTTTTCCTTTTAAAACACTTCCATA260.14515408664582402No Hit
GTCCAGGCACTGCTGCCCAGCCTCCAAGCTCCATCTCCACTCCAGATTTT230.12840553818669048No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA220.12282268870031264No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG220.12282268870031264No Hit
GGATACGCCTGCTGACGCAAACAAGAGAGGCGATCAGCCAATCGGCGTGA220.12282268870031264No Hit
GTACATGGGAGTGCGGGTTGCGCCAGCAGCCTTGGCGGCGGCGGCGCCTC220.12282268870031264No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT220.12282268870031264No Hit
CTCCCTACCCATTCCTGCCAGCTCTGCCTCCTTTTCAACTCTCCACATTT210.1172398392139348No Hit
ATGTTAGCCCCATAATTTTTTTTTTCCTTTTAAAACACTTCCATAATCTG210.1172398392139348No Hit
TCCATAATCTGGACTCCTCTGTCCAGGCACTGCTGCCCAGCCTCCAAGCT210.1172398392139348No Hit
GTACATGGGAAGATGGACACTGGGCCACCCTCCCAGGCACCAGACACAGG200.11165698972755694No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC190.1060741402411791No Hit
TCACTAGCCCTGGGGGGCAGAAAGGATTTGTCTCAAGCCCCCCAAGGGGC190.1060741402411791No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG190.1060741402411791No Hit
GACATAGACATAGGCCTAGACACCGACACAGACACCGACACAGACACAGC180.10049129075480126No Hit
TTGTAAAACAGAGCTGAAGTCACAGGAAGTAGGGAACTTTGCACCCAACA180.10049129075480126No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT180.10049129075480126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)