FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003677860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACGGGAAGATATTTCCCTTTCCAACATAGGCCTGAAAGCGCAACAAA39.67741935483871No Hit
CATCATCATGAAGGTCGACACTACATGGCAGCGTGTCGTTGTGGGCCTCA26.451612903225806No Hit
GGCCCAGAAGCAGCTTGAGGGCAGGCGCTGTGTCCTGCTTACCACGGCAC26.451612903225806No Hit
ATCGAGGTGTGCCCCGATGCCAGTTCGCCATCAACAGCATGGCCGTGGTC26.451612903225806No Hit
GTGCCGTCGCCGGGGCTGGTGAAGAATTACGTCGCGCCGGGCGGGATGCA13.225806451612903No Hit
CCTGTAGGCAGATCGACCACGACCCAGCTGACGCGTCCGCTTTCGACCTG13.225806451612903No Hit
AGCTTGATCTTAAAAATCCAACGGCCGGGTCTCCTTGGGTGATAGCTTTA13.225806451612903No Hit
TCTTAAAACAGAAGACGTCGAAAATAGATAACGGTAGTTTTTGCGGTAAG13.225806451612903No Hit
GCTGGATCCTGGGAGGCAGAGGTTGCAGTGAGCAGAGATCACATCACTGC13.225806451612903No Hit
CTCTGAAATGAATGCACACAACCCAAACCAGTTTTTCATTAAGCTTCTTT13.225806451612903No Hit
CTTGACATAAGCAGATGGAAGAAAATTGTAAATATTACAGTAAAAATCAA13.225806451612903No Hit
TGATTGGTCTTTCTGGTATGGCCAGCCCCCATCCTGTGTCTTTTTTTTTT13.225806451612903No Hit
CCCAGCGTCTGGGTCTCCGCGCCGCCGATCGTCTCGGCAGCGACGACGCC13.225806451612903No Hit
CCTTCAACTGGTGGTAACAAGGCATCCTTTCTTTTCCCTACTGGTGTGGT13.225806451612903No Hit
GCCCCTGGGCACGTCGTCGAACTCTGGTACACCGGGTAGCCATCGGGGGT13.225806451612903No Hit
GCGCCACGTAGCGCCGGCGCTGCGTGGCCAGCACCGCCGCCCCGCCGACG13.225806451612903No Hit
GTTCCAGCGGAAGCGCTGACTAGGCGCCGCTATTCCGAGTCCATACAACC13.225806451612903No Hit
CCGGTAAGCACCAGCGCCAGTCCCATCAGAACCTGGCCTGTGCCGAGTGT13.225806451612903No Hit
GCACCGCCCCCAGCCGATGCTTCTTCAGATACGCCATGGGCGACAGTGCG13.225806451612903No Hit
TCCCGTCGGTCGTCCAGAAGTGGACGCCCTCGGCGCGGTCTGTCTCTTAT13.225806451612903No Hit
CACACACACACACATATATGCCTAGCAGTAGAATTGCTAGATCATATGGT13.225806451612903No Hit
GACCACGCCGTGGTAACTCACGTCCGGCTCGTTGAGACACGCAAAGCGCG13.225806451612903No Hit
GTTCTGTTCGCTACCATCGACAATGACAATTTGCCAGATGAGCAACACCT13.225806451612903No Hit
CTTAAGATGTGGTTGAAAAAGTTTGTCTTTTTTTTTTTTTTTTAGATTTA13.225806451612903No Hit
ATTTAGCGTAATACTATAGCCCCGATATAAAATTTTTTGTGGAGATAGCG13.225806451612903No Hit
CGACCCATGACGGGCGGAAAAATGTCGCCCGGTAGACCCGGACGCTCTAA13.225806451612903No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)