FastQCFastQC Report
Tue 10 May 2022
EGAF00003677886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30136
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATATTTGGGATAGTTGGCTCCTCGCTGGGTCAGGATGGCTGGGTGCC560.18582426333952748No Hit
GTTCTCTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAGAACCTCGCAAT510.1692328112556411No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT440.14600477833820016No Hit
CTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAGAACCTCGCAATGACAG380.1260950358375365No Hit
GTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCCCTGCTGTCAT380.1260950358375365No Hit
GGATGGCTGGGTGCCTTCTCCCCTGGCATGGTTCTCTTCTCTGCAGGGCG380.1260950358375365No Hit
GCTTAAGACGGTGAGGTCAGCTTCACATTCTCAGGAACTCTCCTTCTTTG360.11945845500398194No Hit
GAATTAACCCGAGCAGGCATGGAGGCCTCTGCTCTCACCTCATCAGCAGT350.11614016458720466No Hit
GGCATGGAGGCCTCTGCTCTCACCTCATCAGCAGTGACCAGTGTGGCCAA320.10618529333687285No Hit
GTGCCATGGGCTTCACTGCGGCGGGAATCGCCTCGTCCTCCATAGCAGCC310.10286700292009557No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)