FastQCFastQC Report
Tue 10 May 2022
EGAF00003677888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30005
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTAAGACGGTGAGGTCAGCTTCACATTCTCAGGAACTCTCCTTCTTTG490.16330611564739209No Hit
GTGCTAGATGGCGCCTGGAAGGGGGGTCACCCAAGTCTCCCTGCTGTCAT480.15997333777703715No Hit
TAGTAGAACCTCGCAATGACAGCCGCAATGGCAGACCCAATGGAGCCCAG450.14997500416597234No Hit
GTTCTCTTCTCTGCAGGGCGAGGGGCAGGGAGCTAGTAGAACCTCGCAAT440.1466422262956174No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT420.1399766705549075No Hit
GTGCCATGGGCTTCACTGCGGCGGGAATCGCCTCGTCCTCCATAGCAGCC390.1299783369438427No Hit
GAATTAACCCGAGCAGGCATGGAGGCCTCTGCTCTCACCTCATCAGCAGT380.12664555907348776No Hit
GGGTGGCCTCTGGCTCTGCCGTAGTTTTGCCCCTGGCCAGGATTGCTACA360.11998000333277786No Hit
GCTCTCACCTCATCAGCAGTGACCAGTGTGGCCAAAGTGGTCAGGGTGGC340.11331444759206798No Hit
CATCAGCAGTGACCAGTGTGGCCAAAGTGGTCAGGGTGGCCTCTGGCTCT330.10998166972171304No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)