FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003677893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGAAGAAAGAGCACCCCCCGGAAGTCAGCAGGGAAACGCAGAGAACTC32.127659574468085No Hit
GGATAGAGCGCACACAGGCCTCCAGCTGGGCCATGTCCGTCTCATCATCC32.127659574468085No Hit
GACATTCTCTATGAGGACCAGCAGTGTCTTGTGTTCCGTGATGTGGCCCC21.4184397163120568No Hit
CGCTCTCCGCAGCCGCCCGCCGTCCGCGCCCGCCGAGAAAGACAGGACGG21.4184397163120568No Hit
CCCCGGACCCACCCCTGAAGATCCCAGGTGGGCGAGGGAATAGTCAGAGG21.4184397163120568No Hit
GAGATAGATCTGCTGGGGCATAGGATATGCATATTATGCATTTTGCTAGA21.4184397163120568No Hit
GGAATGTCTGATATTGGGGAAATTTGGGAAGCAGTTAAAGTTTTAGAAAA21.4184397163120568No Hit
GTGGTATAGTTTGAAATCAGGTAGCATGATGCCTCCAGTTTTGTTCTTTT21.4184397163120568No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGC21.4184397163120568No Hit
ATATATATATATATACTCTTGCATCAAAAGTCACAAAATTTTAAAAAGTT21.4184397163120568No Hit
TTCCAATGCCACAGACAACTCACATTGTTCAACTCCCTTCTCGGGGTGGG21.4184397163120568No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTT21.4184397163120568No Hit
ATCAACGCAGAGTACATGGGGCGACCACCGAGATCCTGTCTCTTATACAC21.4184397163120568No Hit
GGTTTTATATGAAATTGCTCCAGTTGTTAATAAACAGGAAGTTCTTTATT21.4184397163120568No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA21.4184397163120568Clontech Universal Primer Mix Long (96% over 26bp)
TTTTTAAATAGGGAACGTGCTCAGTCACTTTCAATGGGCACCAGGAGAAA21.4184397163120568No Hit
GCCTACGGAGGTGGCAGCCATCTCCTTCTCGGCATCATGGCCGCCCTCAG21.4184397163120568No Hit
GCTTTATTTCATTCTCTTGCCTGTTTGCCCTGGCCAGAACTTCTAATACT21.4184397163120568No Hit
GTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAA21.4184397163120568No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA21.4184397163120568No Hit
GCCTATTTCGGCTCTTTGGCCGGCATCGAAATGATCTTCTCGCCCTCGGC21.4184397163120568No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAC21.4184397163120568No Hit
TGTCCGGGCTGATGCGCAGGCGCTCGACCAGCAGGCCGCACAGCAGCTTG21.4184397163120568No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.4184397163120568Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTGGACCTGTTGGTACCCTGT21.4184397163120568No Hit
CAGCCAGTGTGGGGATGTGATGAGGGCCCTGGGCCAGAACCCTACCAACG10.7092198581560284No Hit
ATGTAATTATTATACGAATGGGGGCTTCAATCGGGAGTACTACTCGATTG10.7092198581560284No Hit
TGCTTCCCAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG10.7092198581560284Clontech Universal Primer Mix Long (96% over 26bp)
ACTCAAGCTGGAGTGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCACC10.7092198581560284No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA10.7092198581560284No Hit
GTGTGGTAGAAAATACCTGAAGACAATAATGGCTAGAATTTTTCCAGATC10.7092198581560284No Hit
TCAACGCAGAGTACATGGGTACGGCGACCACCGAGATCTCTGTCTCTTAT10.7092198581560284Illumina Single End PCR Primer 1 (95% over 22bp)
GGATACTATGCAGCCATAAACAGGAGTGAGATCATGTCCTTTGCAGGGAC10.7092198581560284No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC10.7092198581560284No Hit
CAGCTAAGGCCAGCATCCAGCTGCCCTGTGACTTGGGAATGTTTGATGAG10.7092198581560284No Hit
CTGTGAGCTGGCCTCACCTTTCTGCCTAGCGTTAGTTCCTCATTTGCTTA10.7092198581560284No Hit
GCTGGGCTCAAGAAGTCCTCCTGCCTCAGCAGCCTGAGTAGATGGAACCA10.7092198581560284No Hit
GTCATGCATTTTAAGTTTTCACAATCAGTTAATTTCTATATCAATTTTAG10.7092198581560284No Hit
CCTGTAAGGTCTCTAGCATCAATTCACGCTTTGCCAAAGTACACATCCTG10.7092198581560284No Hit
CTCCTACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCC10.7092198581560284No Hit
ACATGGGGGTATCAACGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT10.7092198581560284No Hit
GTTCTTGGCTTTCACAGGAACAACTTTTGCAGCTTTCTTTCCTTTGGCTG10.7092198581560284No Hit
CGTCTGATCTCGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACCTGTCTC10.7092198581560284No Hit
TCTCCGAAGAGATTGGATAAACCGGCCTCTTTAAGCCACTCTTCTTCCAA10.7092198581560284No Hit
GTCGTACACCGGCACGATGCGCACGCCCGGCGGCAGCTTGCGCTGCAGCT10.7092198581560284No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.7092198581560284Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG10.7092198581560284No Hit
CAGTAGTTAATTACGTGAGATTCTTTAATTTTGGTCTCTGAGCTGGGCGT10.7092198581560284No Hit
GCGGGATGACCTGTGAAGTGCGGCTGCTGAAGATGTTGCGCGCGTCGGGG10.7092198581560284No Hit
GGACTGGAGACACAGGGAGACCCATGTACTCTGCGTCTGTCTCTTATACA10.7092198581560284No Hit
ATCACACGCACCCCAGTTCTCAAACTTGTACTTGCAGTCGGCTCCAAACT10.7092198581560284No Hit
ATATCTATATATGTTACAGATATATAAATACATGTAAATATATAATGTAG10.7092198581560284No Hit
GGCCATGGAGGCCTATAATGAAAAACTGAACATCGCCAGATAAAAACTGG10.7092198581560284No Hit
CCCCTGGACCGCCGCCATTTCCTCATTCAATCGGGTTCCGCCGCCGCCGT10.7092198581560284No Hit
GGACTGATATGAAGCACCTGCCAGAGTTTCTCCACTTGCTCTTCCTCCTA10.7092198581560284No Hit
GGAGTGAAGAGAGTGAGGTTTGGGGATCCTTCTCGGAGAGAGAAAGGCGG10.7092198581560284No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTT10.7092198581560284No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGTTCCATCTGAATCTCGGT10.7092198581560284No Hit
GAACGATCTCACTGTCGATGAACTGCACGAATCTCGACATCTCGCCCCCG10.7092198581560284No Hit
GGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCC10.7092198581560284No Hit
CCCTATGGCTACTTTTCCCCCAGCTATATATAATGGCATTCTAGCAAGAT10.7092198581560284No Hit
CGATTAAGCTGCCGAATCTGGTGACGGTGTTGCGCCTGCACTCATGGAGG10.7092198581560284No Hit
CAATTATGCCAAAAGACATCCAGCTAGCACGCCGCATACGCTGTCTCTTA10.7092198581560284No Hit
CTACAGAGTCACACTCAATCCTCCGGGCACCTTCCTTGAAGGAGTGGCTA10.7092198581560284No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.7092198581560284Clontech Universal Primer Mix Long (96% over 26bp)
ATTACAAGTAGGTGATTTTTTTCCCCTTTAATTAAGATATTAAAAATAAT10.7092198581560284No Hit
GTATCAACGCAGAGTACATGGGACAGTTGAAGAAGCGACCGAGGGACTGG10.7092198581560284No Hit
GGCCATCTCTATCCTTTGGTTTTTTAGGACTAAGGGACGAGACTACTCTG10.7092198581560284No Hit
GAGCAATGCCTGGGCTGACCTCAGGAGCAATGGGATCCAGGTATGCTAAA10.7092198581560284No Hit
TTGTCAGTCTTGGTGACAGTGACATTGAAGGTGGGGGCCCCACCGGTGCT10.7092198581560284No Hit
CACAAAAACCCCATCCAAAGGTCATCAGCATCAAAGATCAAAGGTAGATA10.7092198581560284No Hit
AGTTCATGCCGTAACCACTGTGAGAGATTGTCAGCTGGTATCTCAGAGAA10.7092198581560284No Hit
ATTCGTTGGTTGTGGACCTGGACAAAGTCCAAGTCTGTGGAACTTAAAAC10.7092198581560284No Hit
GCATCTCATCCGTGCGCTTCCAGCGCGACAACGCCGTCACCGGCCGGCTG10.7092198581560284No Hit
GAGGGCAGCCGCGCGCCGTCATGCGGAAGAGAAGCGTCTTTTGGCGAGCG10.7092198581560284No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTT10.7092198581560284No Hit
ACCGTAGCGAGGGTGCTGCTGCGCTGGGGGAAGGAAAACGCCGCTTTGAC10.7092198581560284No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTCGGTTTTA10.7092198581560284No Hit
GGATAAGTGACCCCCCCGGACCTTGGAGTTTCATGCTAATCAAAGAAGAG10.7092198581560284No Hit
TGCCCATACTGCCCAAAGCAATTTGCAGATACTATGCTAATCCTATCAAA10.7092198581560284No Hit
AACTTTAACTGCTTCCCAAATTTCCCCAATATCAGACATTCCTGTAGCTG10.7092198581560284No Hit
ACACTGAATACCAAAAAAAAAAAAAAAAAAAAAAAAAATTAAACTGCGTT10.7092198581560284No Hit
TTGCAGGGTGAGGGCACAATCCACATTGTGAGGTCCAACAGCTGCCAGGA10.7092198581560284No Hit
CTATCAAAGATCAAATGGCAGCAAAAGATCAGGGAAAGAAGGTAGAAAAA10.7092198581560284No Hit
GCTATGGCGCATTGCGCATCGGCGCGAAGCACGGAGCGCGTTTTGCCGGC10.7092198581560284No Hit
GTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCG10.7092198581560284No Hit
CTTGCAGATAGCACAAAAATTGTGTTTCAGAACTGGAAAGAAACATTCTG10.7092198581560284No Hit
GTAATTGAGTGAGAAAAGCAGGATAGGGAAGGGGAAAGCCAAGCCAGGGC10.7092198581560284No Hit
ACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACAC10.7092198581560284No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.7092198581560284Clontech Universal Primer Mix Long (96% over 26bp)
GTGCAATGGCGCGATCTTGGCTCACCGCACCTTCCGCCTCCCGGGTACGA10.7092198581560284No Hit
ATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTCAAGCA10.7092198581560284No Hit
ATTTTGAGCGTCGCAGAGAACTTAGAAGGCAAAAGAGGGAGGAGATGCGA10.7092198581560284No Hit
GTGAAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAA10.7092198581560284No Hit
CTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGATTAA10.7092198581560284No Hit
CTTCTAGGAAATGTCCTGATTTACATGCTTACGGCTTGTCTAATCTTGAG10.7092198581560284No Hit
CTTTCATGGCGTCTGGGGTTTTACCCCACTCATCTTCAGCTGGCTTCTTG10.7092198581560284No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAA10.7092198581560284No Hit
GCGTCAGATGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAATC10.7092198581560284No Hit
GGAGTGCAAGTAGCTGATGAAGTATGTCGCATTTTTTATGACATGAAAGT10.7092198581560284No Hit
ATGCGACTCGAAGCAGAAAGAATCGCCTACCAGAGGAATGACGATGATGA10.7092198581560284No Hit
TCCCTGTACTCCCCAAGGACAAGGCTGCAGGAAGAGGGATCCCCAGGAAG10.7092198581560284No Hit
GGATTTTGATGTTTTTCTATGAAATGTTGTTAGGGCTATTGAATTTATTA10.7092198581560284No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAAGG10.7092198581560284No Hit
GAATTGAAGTGCCCGATCATCACCGGTTCAACGACACCGACTCGACGTCA10.7092198581560284No Hit
GCCCAGGGCTAGCTCCTTGGTGAGAAACTCAAAGAAGTGGGCGCTGTGGC10.7092198581560284No Hit
ATCTTGGCTCACCGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGC10.7092198581560284No Hit
TGCCTGTAATCTCAACACTTTGGGAGGCCAAGGCAGGTGGATCACTTGAG10.7092198581560284No Hit
TGCCCACGCTGCGCGGCCTCTATGCCTGGGAGTTCGAACGGGGCGGACGG10.7092198581560284No Hit
CCATGGAGCGGATCAAGGAGGACCGGCCCATCACCATCAAGGACGACAAG10.7092198581560284No Hit
ATGTCTGGACAGTTGGCATACTTGGAAACTCTTTAGTCATGTATGTATCA10.7092198581560284No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCA10.7092198581560284Clontech Universal Primer Mix Long (96% over 26bp)
GTATGGAATCAACTATTTCGAGATAAAAAACAAGAAAGGAACAGACCTTT10.7092198581560284No Hit
CTTTTAGGGCTCGGTGAAAAAACTGCTTCTTTAAAAGCCTGTTGCAGTAG10.7092198581560284No Hit

[FAIL]Adapter Content

Adapter graph