FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003677895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length146
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA32.083333333333333No Hit
AGGTAACGGTCCTCAGCGCAAGGGTCATTTCGTCGCTGGGAAGGGACGGC32.083333333333333No Hit
CTACTAAAAATACAAAAATTAGCTGGATGTGGTGGCACATACCTGTAATC32.083333333333333No Hit
TTATTAAATTGGTATCCTTGTGGGGGTGGAGTGGGACACAGTGGAGCGTT32.083333333333333No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT32.083333333333333No Hit
AACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACC21.3888888888888888No Hit
CCCCAACTGTGGCAGCCCCAGCTCCAATGAACTTGGCTGCTGTGTCGATG21.3888888888888888No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
TTCTAAAGACAGTACGGGAACAAAAAATAGCAAGACCCCAGATAGTAAAA21.3888888888888888No Hit
GAGTAGGCGAATGCTATGAAGCCCAGGCAGCAGGGGTTCATGAAGAGGGT21.3888888888888888No Hit
GGCAAGCACGGCACCACCGCCTACCAGGCCGCGGTGACCAGCGGACAGTA21.3888888888888888No Hit
GTACTCACTGCTGCAGGCAGCCCTGCTCTGCGTCAACGCCATCGCAGTGC21.3888888888888888No Hit
TGCCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAA21.3888888888888888No Hit
CATCTGAGCAATAGTTCTGTTATTTCACTTTTGCCATGAGCCTCTCTGAG21.3888888888888888No Hit
GTGGAAAGCTGTGTGTTGATTTCATGAATGCGATTTCTGATATGGCGGCG21.3888888888888888No Hit
AGCGAGCCGTGCGCGCTCTGCAGCCTGCACAGCATCGGCAAGATCGGCGG21.3888888888888888No Hit
GGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGC21.3888888888888888No Hit
GTATCAACGCAGAGTACATGGGATGGCACATGCAGCGCAAGTAGGTCTAC21.3888888888888888No Hit
GTATCCGGGCATCGAGATCGAGTCGCGCCTCGGGGGCACAGGTGCCTTTG21.3888888888888888No Hit
CTCTGTGAGTTGAAGGCACACATCACAAACTAGTTTCTGCGAATGACTCT21.3888888888888888No Hit
GCTTGGCAGTAACGCGAGCAGGGGGCGTCCCTATACGCGATGGATCGAGG21.3888888888888888No Hit
TCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCTCA10.6944444444444444No Hit
GGATGGACTCATCATCGAATGGATTCGAAAGGAATCATCGAATAAAATTG10.6944444444444444No Hit
GAATCATCACCAACTATAATCAAAAGAAATCATCAAATGGATTCCACTCG10.6944444444444444No Hit
GTTGATACCACTGCCCATGTACTCTGCGTTGATACCTGTCTCTTATACAC10.6944444444444444No Hit
CTACAGGGGCGGCGTGGTGAGCCGGAACACCAATTCCGTCAGCCTCTCGG10.6944444444444444No Hit
CATTGTGAACTTTGGGGGATGCTCGCTCCAACCGACTGCTGTCACCTTCA10.6944444444444444No Hit
GGAAGGTGGTGCCGGCCAGGGCGGCGGCACCCAGCGGCAGGCGGTTTNCG10.6944444444444444No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGC10.6944444444444444No Hit
ACATGGGACACAGACACTTGAGCACACGCGTACACCCAGACATCTTCGGG10.6944444444444444No Hit
ATTAACCTCTTAGGCCACAAAGGTAGTAACAGCCTGAGTTTGATTTCAGT10.6944444444444444No Hit
CCATGGCCTCCGAGAGGGCAAAGCCCAGAATGGCGTAGGAGAAGAGCTGT10.6944444444444444No Hit
TCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTTAGGAGATGTTGGGCTG10.6944444444444444No Hit
GGGGAGCACAAGAACCCCAGGAAAGACAAAGGCTGAGGGATATGAAATTA10.6944444444444444No Hit
GTTTTCAAGTGAAAAGAAAATCAACGAAGACAGATCCTGACATAATTCAA10.6944444444444444No Hit
GTCTTTACCTTCATCCTTTATGAAGGAAGCTTTGCCAGTTTTGGTCAGCT10.6944444444444444No Hit
CGAGTACACCGACTACGGCGGACTAATCTTCAACTCCTACATACTTCCCC10.6944444444444444No Hit
CATATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA10.6944444444444444No Hit
AGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACA10.6944444444444444No Hit
GAATATAAGAGGATGGGAGTGCCAAACTCACACTGGCAGTTGTCTGATGC10.6944444444444444No Hit
GCGAAGGGAGGAAGAGCAGATTGCTGAATTCAAGGAAGCCTTCTCCCTAT10.6944444444444444No Hit
GTATGTCAATAAACAACAGCTGAACCAAAAAAAAAAAAAAAAAAAAAAAA10.6944444444444444No Hit
TTCTAGGACGTTTTGAGTATGGTCCGTGACCCCATACGGTGGCACGCTGT10.6944444444444444No Hit
ACTCGGGAGGCTGAGGTGGGAGGATCACTTAAGCCTGAGAGGCAGAAGTT10.6944444444444444No Hit
CAGTTTACTTATGAAGACTTCTGTCATGGCCCTTAACTCACAGTGTCCAC10.6944444444444444No Hit
CCATCAGAGTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACC10.6944444444444444No Hit
GCCTGGGGGAGGTGGAGGCTGCATGAGCCGAGACTGCATTACTGCACTCC10.6944444444444444No Hit
ACCGAGATCTACACCTTTTTTTTCGTCGGCAGCGTCAGATGTGTATAAAA10.6944444444444444No Hit
CATGAAATCAACACACAGCTTTCCACTGTCATTCGCCATAGAAGCCGATA10.6944444444444444No Hit
GTCCTGGGACTCGCGCGCGGCGGGGTTCCGGTCGCCCGCGAGGTCGCCGA10.6944444444444444No Hit
TCCTGGAGCGCGCGCTGCAGCCCCAGCCCGACGCGACACTGGAGCGCGAC10.6944444444444444No Hit
GCCTTAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACTATGCCCA10.6944444444444444No Hit
TTCTAGCCATCTCTTAGGACTGAGGAATCAGAGTTCTGATTGTGGAGTGC10.6944444444444444No Hit
TAGATAGATAGATAGATAGATAGATAGATAAATATAAATGTGCTTCTAAT10.6944444444444444No Hit
ACGCAGAGTACATGGGGAACCTGGGAGGCGGAGGTTGTGGTGAGCCGAGA10.6944444444444444No Hit
TGGTCCTCCCAGGGACTCCCATTAAAGTGCTGACGTAGGCTTTGATGCTC10.6944444444444444No Hit
AACCCACACAGATTTTACCATAACACTGTTTCCAAACTGCTGAATCTAAA10.6944444444444444No Hit
GTTAAAAAGTAGTTGGAAAGAAAACAAAAAGGCACGTTTCACTTTGTTAT10.6944444444444444No Hit
GCATTGGGTTAAAAACGACAACCAACATCAGCCATGAAAGATCCAAGTCG10.6944444444444444No Hit
CACCTCGCGGCCGGGGACGGCGAGCCGGTCGGCGAGCTCGGGCGGGCAGG10.6944444444444444No Hit
TGTCAGCGCTCAGGAATGTGCTCCGGCAGAGTGCTGAAGCCATAATCCCC10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAAACC10.6944444444444444No Hit
GAGCTACCCGCAGGCGCTGATGAAACCTTATCGCAAGGGGGAACGCTGAT10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTAAAA10.6944444444444444No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GCTATGGCGCATTGCGCATCGGCGCGAAGCACGGAGCGCGTTTTGCCGGC10.6944444444444444No Hit
GTGCTGTACCGCGACCGCCGCAACCAGGAACGTGCCGAGCAAAAGAAGGC10.6944444444444444No Hit
GAATGAGGAAGTACAATTTGCACATGAATTTGCATGATGGGAGGGACCAG10.6944444444444444No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA10.6944444444444444Clontech SMART CDS Primer II A (96% over 26bp)
GAATTGGCACCAAACATTAATTTTCTTTGTATTTTATTGAATATGAACAC10.6944444444444444No Hit
CTGTTCGACGATGCAGTAACGGGAGAAAGTGAATGAGTGCTGTCGATAGG10.6944444444444444No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CTTTGAAACACTCTTCTTGTAGAAACTGCAAAAAGAGTGTTTCAAACGTG10.6944444444444444No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
ACCCTGGATAATCTGAGTGGGCTCAATGTAATCACAAGAATCCTCATAAG10.6944444444444444No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CTTCCACATTCCTCTCTAACTCGCTGATGCGCTGGGACGCGTTGAACAAG10.6944444444444444No Hit
TCTCAGAATGTTTCTGTCTAGTTTTTATGTGAAGATATTTCCTTTACAGC10.6944444444444444No Hit
GTCTTGCTGTCTTGCCTAGGCTGGTCTTGAATTCCTGGGTTCAAGGGATC10.6944444444444444No Hit
CTGACATGGCACAACGCCCCGTCTATCCCTTCTGCGCCATCGTCGGTCAG10.6944444444444444No Hit
CCTCAAGGGTACCCCTACCAAGGATACCCACAGTACGGCTGGCAGGGTGG10.6944444444444444No Hit
GGTCTGCATACTCGCTGCCCGCCGGCTCCCTCCCCCGCGTCCCTGCGACC10.6944444444444444No Hit
GTGTAGATCTCGGTGGTCGCCGTCCCATGTACTCTGCGTTGATACTGTCT10.6944444444444444Illumina Single End PCR Primer 1 (95% over 23bp)
GATCACGCCATTGTACTCCAGTCTGGGAAAAAGAGCGAGACTCCGACTCA10.6944444444444444No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTT10.6944444444444444No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTAT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TCAGACAGCTGTGATGTGAGCAGGGGCTAGGCCGGTAATCAAGGGGGCCA10.6944444444444444No Hit
GAGTGTTTCAAACCTGCTCTATGAAAGGGAATGTTCAACACTGGGACTTC10.6944444444444444No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.6944444444444444No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTT10.6944444444444444No Hit
GACTGTGGTCGCCCCGTCCGCTGTGGCGGGAAAGCGGCCCCCAGAACCGA10.6944444444444444No Hit
GGAGACCGCGTATTCTTAGATTCAGCCGCCGAAGCCATACAGAGTGCGCC10.6944444444444444No Hit
GCCTATTTCGGCTCTTTGGCCGGCATCGAAATGATCTTCTCGCCCTCGGC10.6944444444444444No Hit
GTCTCAGAGTTTACAACCTTGTAAATGCTACCCCAAATGTAAAGAAGAAT10.6944444444444444No Hit
GGATTTTGATGTTTTTCTATGAAATGTTGTTAGGGCTATTGAATTTATTA10.6944444444444444No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GGGTCACGAAACGTTGTAGAAAAGCTGCAGCGAGCATCGCGCCGCCTTCG10.6944444444444444No Hit
GCGTCAGATGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAGTACACTGCGT10.6944444444444444No Hit
CAGGCACACTGCTTGAGCCCATGAATTCGGGACCAGCCTGGGCAACATGC10.6944444444444444No Hit
TCCTCTTACTCTCCCAAAGGAAGAGAAGAACCAAGAAGCAATACCAAGAG10.6944444444444444No Hit
GGAAGGTGGTGCCGGCCAGGGCGGCGGCACCCAGCGGCAGGCGGTTTACG10.6944444444444444No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGATAACACAA10.6944444444444444No Hit
GAGTGTTTCAAACCTGCTCTATGAAAGGGAATGTACAACACTGGGACTTC10.6944444444444444No Hit
ACACAATTCAGTCAGCTCTCACAGACACCCGATAAAGTCAGATCCTTTTA10.6944444444444444No Hit
TAGTACTCCCGATTGAAGCCCCCATTCGTATAATAATTACATCACAAGAC10.6944444444444444No Hit
TCGCTGGTCAGGTCGGACCAGAAGCGGCTGCGCAGGGGAGGCGGATTCAT10.6944444444444444No Hit
TATCAATGCTGGTAGCCAGTTTGAATATAATGTAGAAGGAGTGACTTCCA10.6944444444444444No Hit
CCATTAGTTAAAAGGATTTTAACTGAAACTGTAATCAGTCTCAGGAGCGT10.6944444444444444No Hit
ACTATTAATAGCATATACTGGGGTAATTCCTAGAGAAGGGTGTAGTATTA10.6944444444444444No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGGC10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTGTACCCC10.6944444444444444No Hit
GTTGATTTCCCTGCGTTTGTATAGCCGACAAGCGCAATTTGAAGCACACC10.6944444444444444No Hit
CTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCTATTAAAATTACG10.6944444444444444No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAAAAAGT10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGATATCAACGCAGAGTCTGTC10.6944444444444444Clontech Universal Primer Mix Long (95% over 23bp)
TCCTGGCGCGCGCGCTGCAGCCCCAGCCCGACGCGACACTGGAGCGCGAC10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACAA10.6944444444444444No Hit
CCAGATATTGATGGCAGAAGGCTTGGGGCCAGGAGACAGAAAATCCAGAT10.6944444444444444No Hit

[FAIL]Adapter Content

Adapter graph