FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003677896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003677896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTCACTCTTGTTTCCCAGGCTGGAGTGTAATGGCACAATCTCAGCTCA32.083333333333333No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA32.083333333333333Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTTTAAAATCTAGTGAATAGGAATTTTATTGGACCTAACAAAATTGTTGC32.083333333333333No Hit
CGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATG32.083333333333333No Hit
GCCACATTCAATTAATTTAGCTCTCAGCAACTCTTTGAGGCGTTCTCTTT32.083333333333333No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA32.083333333333333No Hit
ATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCAGGCG21.3888888888888888No Hit
CTTCTGTGGAAATCGAATCGTCTCTTCATTGATATTAATAGCACACTAGA21.3888888888888888No Hit
ACTATGAGATGCTCAAGGAGGAGCACGAGGTGGCTGTGCTGGGGGCGCCC21.3888888888888888No Hit
AGTCAGCTGAAGTCATTGGCAACAGCAATTGAAGTGAAGATGATTGACCG21.3888888888888888No Hit
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC21.3888888888888888No Hit
ATGAGGGCGTGATCATGAAAGGTGATAAGCTCTTCTATGATAGGGGAAGT21.3888888888888888No Hit
CTCCAGGAACGACCAGGTGGCGACCGACATTCGCCTGTACATGCGCGCCG21.3888888888888888No Hit
GTTTGGAAAGACTCTGTCTGTAAAGTCTGCAAGTGAATACTTGGACCCCT21.3888888888888888No Hit
ATGCCCAACTTTGGGGCCCAGCAGGTACAAAAGCAGACTTCTAGGTCCAT21.3888888888888888No Hit
GTGCGGCGGGTTCCCGGGTGGAGCCAGCGCAGACAGCGTGGGTCCCTGCG21.3888888888888888No Hit
GTGCAATCTCAGCTAAACCGACGCAGTTTTGCTCCTTGGATTCTGAGCCC21.3888888888888888No Hit
GTGCCCCACCATGCATTGGCGCGCGCATAGGCGGTCTTGTCGTCGCGGCC21.3888888888888888No Hit
CCAGAGTCCTGTGCAGTCACAGGATGACGCAGGGAGGACGGCTGTTGGTG21.3888888888888888No Hit
GCCTGTTGGGGGCCAGTGCCCTCCTAATTGGGGGGTAGGGGCTAGGCTGG21.3888888888888888No Hit
CAAGAGCACCTCACAGCTGCTGAGCCGTCCGCTATCTGCAGTGGTGCTGA21.3888888888888888No Hit
CTGTGTCGAAGTCCCGCGACGCGAGCGCATGCAGGAACTCCAGGTGCTCG21.3888888888888888No Hit
GTCCGGCACGGGGCCGTTCGCCGACGGCTGTTGCCGGAGTCTCTCTGCAG10.6944444444444444No Hit
GTGATGTAATTATTATACGAATGGGGGCTTCAATCGGGAGTACTACTCGA10.6944444444444444No Hit
ATCTAAAAGGATCTGACTTTATCGGGTGTCTGTGAGAGCTGACTGAATTG10.6944444444444444No Hit
CAGCTTTGATATGGCGAAGCCATCCCGAGCTCTCCAAACCGGAGTAGAAA10.6944444444444444No Hit
ATTCGGGGCTCTGTAGTCCTTTCTCTCAATTTTCTTTTAAATACATTTTT10.6944444444444444No Hit
ACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGACCTGTACGCCAAC10.6944444444444444No Hit
GCATGAAAGCAAAATAGAGGCAGAGAATACACCAAGAATGAGAAAAATCT10.6944444444444444No Hit
GATTCGAATAGAATCATCGAATGGACTCGAATGGAATCATCATCGAATGG10.6944444444444444No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGCCGTGGTTGGTGGCGCGCGACATCACGATCGTGTCGACGGTTCCCACG10.6944444444444444No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTT10.6944444444444444No Hit
GAATACAGGCGCCCACCACCACACCCAGCCAATTTTTTGTGTTTTTAGTA10.6944444444444444No Hit
CTCTTGGACACCCTGTGCACCTGTAGTCAGGCAGATAGGCCACAAAGGTG10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGCAGTGGTATCAACCTGTCTCTTATACAC10.6944444444444444No Hit
GCCTATAGCTGATAAGGAAATATCTTTACACAAAAACTAAACAGAAGCAT10.6944444444444444No Hit
GGTTAAAGATGGAGAAATTGTATACACTGGAACAGAATCAACCCAGAACG10.6944444444444444No Hit
CATTTTAGCTGAGCATTTTGATATATTTTTAAATCATGTCTTTCAAAATG10.6944444444444444No Hit
GTGTGACCCCACTTACAGTCGTATTTTATTGAATTTAGCTTTCCCTAATC10.6944444444444444No Hit
ACTCTGCGTTGATATCACTGCTTCCCATGTACTCTGCGTTGATACCTGTC10.6944444444444444Clontech Universal Primer Mix Long (95% over 23bp)
GTTGGGGCTAAAGCAGGTCTTCATGATCAGGTCAACTCCGATGCGTTCAG10.6944444444444444No Hit
ATATAAAAACAGCTGCTGAAAAAACAGCTACAGACAAGAAACGAGAGCGA10.6944444444444444No Hit
GAATAATCCATAATTATTTATCCTTTCTACTGTTGGTGTACATTTGGAGA10.6944444444444444No Hit
GGACAGGTGGTAGGGCCCGGGAATCTCCCGGTGTTGCGGCAGTAGGGCTG10.6944444444444444No Hit
CAACGATCCCTCCCTTACCATCAAATCAATTGGCCACCAATGGTACTGAA10.6944444444444444No Hit
ATACAGCACATGTTAAAAAATGTTTGTGGACTGATTCAGTAAAAAAAAAA10.6944444444444444No Hit
GCTTTCAGGCCTATTGTGAAAAAGGAAATATATTCCCATGAAAACTAGAC10.6944444444444444No Hit
CTTCTGAAAACATCCACGGTGAAGGGCAGGGCCAGGCCTGGCTGTGGAGT10.6944444444444444No Hit
GCGTGCGGGCGGCCAGGATGGAGGCCTTGAAGACTTCTTCGATCGGCACG10.6944444444444444No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA10.6944444444444444No Hit
GTCGATCGGCAGCCTCGTCGAACTCGCTGCGGGACACCCCGAGTCGCCGC10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGAAACGAGAGAAAGTGGCACAGCTGCGAA10.6944444444444444No Hit
ATTCTGACATTGCCGACGTCAAGTCCTCCGGCGCTCGCGAAGGCGGCGCG10.6944444444444444No Hit
ATTGCCACCTTCTCCATAGATTTGGAGGCTTAGAATAAAACCTCATCATC10.6944444444444444No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTAAAACAA10.6944444444444444No Hit
GTTGGGACGTGGTGCTCATCTGGGTGGGAATCCTCGATGCGGCGCGTCCG10.6944444444444444No Hit
GATATAAAAATTCCAAACATGACCAAAGTAATAACTTCTACTGGCATGTC10.6944444444444444No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTGTTTTTAC10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGGCCAGAGCTGAGATGTTGTTAGAAGAAG10.6944444444444444No Hit
GGATCATATGTCCTATTTTTAGTTTTTTGAGGAACCTCCAAACTGTTCTC10.6944444444444444No Hit
CTCTTGGTATTGCTTCTTGGTTCTTCTCTTCCTTTGGGAGAGTAAGAGGA10.6944444444444444No Hit
GTATGCAATGCTGTTCTTGCAGTGGTAGGTGATGTTCTGAGAGGCATAGT10.6944444444444444No Hit
AGTGGATATTTGGTCCTCTCTGAGGATTTCGTTGGAAACGGGATAAACCG10.6944444444444444No Hit
GTGTATGGACATCTTGGTGGAACCACGAGACCTCAGCCGGTAAATCCTGT10.6944444444444444No Hit
GGCTCAGGCAATTCTCCTACCTCAGCCTCCTGAGTAGCTCGGGCTACAGG10.6944444444444444No Hit
CCTTCACCCACTGATTTCATTTTCTCACCTACCTCTCACTCCCCACCCAC10.6944444444444444No Hit
CCATCAAATTCATCCGAACGGTCATTTTTTGACCGTTCGGATGAATTTGA10.6944444444444444No Hit
CCTCAGGGCCTATGCACTTCCTAATTCTGCATGCAACACTCTCCAGAGAG10.6944444444444444No Hit
GGCGTACTGCTCGGCGTGCACCACTCGGTAGGTGCCCTGGTGGTCCTTGC10.6944444444444444No Hit
GGTCTGAACGCTTGATAAACCTGGATTGAAGCACCTAGAGAAAAACAATT10.6944444444444444No Hit
GTATCAACGCAGAGTGCATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA10.6944444444444444No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTTAT10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCAACATCTCCAACCAAGATCTCTTTGCCTTCTTCTACAATGATGCACTT10.6944444444444444No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTGGTTAAGC10.6944444444444444No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.6944444444444444Clontech SMART CDS Primer II A (96% over 26bp)
GCATTTACATGGGTAAATCTATGACAGATTTCAATTTTTTTGGCATAAGA10.6944444444444444No Hit
TTACAAAACCGGCTATTCGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGC10.6944444444444444No Hit
TGTCCAGACGTATTCCTTCTGGATGCTCTAGGGAGAATCAATTCTCTAGT10.6944444444444444No Hit
TTTTAGTAGAGATGGGGTTTCTCAGTGTTTTTCAGGCTGGTCTCGAACTC10.6944444444444444No Hit
CTCCTGACCTTGTGATCTACTTGCCTCAGCCTCCCAAAGTGCTGGGATTA10.6944444444444444No Hit
GTTTCCAGTTTCGTTTACCCCCGACCACATGCCCCAAATACTCCCCTGGC10.6944444444444444No Hit
GCGCAAGCTCATGGCGGCAATATTCCTGGCCGGCACCGCGACGATGGCCG10.6944444444444444No Hit
CAGTTATGGTTACATCAACATCTCCAACCAAGATCTCTTTGCCTTCTTCT10.6944444444444444No Hit
CAAACTTGAAATAAGGCTTAACAGTTCGGATAGACAGGGTAACTGTAGCA10.6944444444444444No Hit
GATATAAATATTCCAATAATGACCAAAGTAATAACTTCTACTGGCATGTC10.6944444444444444No Hit
CAATTCAATGAGACCCTTGTGCTCACTGCTGGATTGTGCGATGAACTTAC10.6944444444444444No Hit
CAGTGGTGCTGAAACGACCGGAGATACTGACAGATGAGAGCCTCAGCAGC10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGAAGCAGCGGTATCAACGCAAAGAAAAAA10.6944444444444444No Hit
ACCACATACACTGTGGTTTTAGGAGGCTCCTGAGGTCCACCCTGCCAGCC10.6944444444444444No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC10.6944444444444444No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAAA10.6944444444444444No Hit
GGGCTTGCGTGCGGCTGCCGTCATCGGTGCGGCATTGCGGGAGGAAGCGG10.6944444444444444No Hit
GCATTCATGTCACAGAGTTAAAACTTTCTTTTGATTGAGCAGTTTGGAAA10.6944444444444444No Hit
TATCAACGCAGAGTACATGGGACGGGGGCCCCCCAGAAGTAAACCGGTGT10.6944444444444444No Hit
GTCAGCACTCGTCAGGCGGTTGAACCATGTTGATTTCCCTGCGTTTGTAT10.6944444444444444No Hit
ATCTGTATCTTTCATTTTTCTAGCCATCATAGTCAAAAATTCGGGGAAGT10.6944444444444444No Hit
GTTCTTTCCTGACTTTTTAATGATTGCCATTCTAACTGGTGTGAGATGGT10.6944444444444444No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GCTTTCAGGCCTATGGTGAAAAAGGAAATATCTTCCCATGAAAACTAGAC10.6944444444444444No Hit
GTGTCCAAGCTACATCTTACTGATTACTACATACATAAATCATGTTTACT10.6944444444444444No Hit
CAATAAATTCTTCTTCCCATAACTCCTCTTCTATTTGTCTGTTGAATTCT10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA10.6944444444444444No Hit
GAGCTCACTGCCTGGGTTTGTAGAGATGCTGATTTCTCAGAGGAACATGG10.6944444444444444No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTAACAAAACA10.6944444444444444No Hit
GTACATGGGGCGACCACCCAGATCTACACAATTTTTTTAGTCGGCAAAAA10.6944444444444444Illumina Single End PCR Primer 1 (95% over 21bp)
CTATTCGGTGATTCCATTCGATTCCATTTGATAATGATTCCAATCGAGAC10.6944444444444444No Hit
GCGCTATTTGCGCCAAGAACTGTTAACGTCTTGAATTCCAAAAAAAAAAA10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAACCATAAAAAACAAA10.6944444444444444No Hit
CCCACAGCCAATATCATACGGAATGGACAAAAACGGAAAGCATTCTCTTT10.6944444444444444No Hit
CGCAAGCCCAACGATTCCGGCGTGGCGATCCAGTACAGGGTCGAGGGTGC10.6944444444444444No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTTAA10.6944444444444444No Hit
ACACTATCTTGGATATGATATGGCGCACTACACAAGCTAGCCGCTGGGGA10.6944444444444444No Hit
AAACAAATCTCCTTCTTCAGCACTTGCACAGCTCAGTTCCCAAATTCCTG10.6944444444444444No Hit

[FAIL]Adapter Content

Adapter graph