FastQCFastQC Report
Tue 10 May 2022
EGAF00003678164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19386
Sequences flagged as poor quality0
Sequence length146
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT780.4023522129371711No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA500.25791808521613535No Hit
GTACATGGGACACCCCGCGCAGGATTCGGACGGAGAGCGCGAGGACTCGG480.24760136180748993No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT380.19601774476426287No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA380.19601774476426287No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT320.16506757453832663No Hit
AGCACACCCTGAGCAAGAAGGAGCTGAAGGAGCTGATCCAGAAGGAGCTC230.11864231919942227No Hit
GTACTACAGAGACCGGCTGCCCGTGTGCCCGGCAGGTGGAGCCGCCCGCA220.11348395749509955No Hit
GTACATGGGAGTCTCGCGCCTGCAGCCCGTGCCGCCCCAGCCGCTGCCGC220.11348395749509955No Hit
CTCTGGGCAAGGACTGGCATCGGCCCTGCCTGAAGTGCGAGAAATGTGGG220.11348395749509955No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA220.11348395749509955No Hit
GAGATACGGAGGCCCGGTCAGACTCTCCCTCTGCACCTCAATGGAAACGA210.10832559579077684No Hit
TGCCTGGACAGTGGCCCTGCAAGCAGCCAAGGATGGGGTCTCCACCACCT210.10832559579077684No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA210.10832559579077684No Hit
TCCTTGTTCCGGTCCAAGTCTTCCATCAGCCTTGCAATTTCAGCATCCTG200.10316723408645415No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA200.10316723408645415No Hit
GTTTAATGAAGTCTGAAAGGTAAGCGCCATCGTGGTCAGAGATACGGAGG200.10316723408645415No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA200.10316723408645415No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)