FastQCFastQC Report
Wed 8 May 2024
EGAF00003678187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443146
Total Bases64.6 Mbp
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCTACATGGCGTCGGTGCAGCTGAACGGCGCGCACCTGTGCGGCGGCG4700.10605985386306094No Hit
GTCCAGCACTGGCAAGAGCACGTGCTGCAGGCTGTCCGGGCGGCGGCCCG4690.10583419459952251No Hit
GCATATAGTAGGTGCTCAATAAAGACCAACCAGATGCAGGAGTGGATGAC4600.10380326122767665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)