FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003678218

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678218
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length146
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATATTTGGGTGAAGAGAGTATTTAATGATTCCATTTTTATTAATAGT311.11111111111111No Hit
ATCGTACCCATTATAGGGATGATCCCGACAAGCTGTCCGTTCACTTCCCG27.4074074074074066No Hit
GAGTGAACAGGCAACCTACAGAATGGAAGAAAATTTTTGCAATCTACCCA27.4074074074074066No Hit
GGGACATTGGAATGCTGCAAACATTTTTTTAAAAACTGTTTTTGAACTGG27.4074074074074066No Hit
CTGCATTCTGGTCCATTCCATTTGATTCCATTCCATTCTATTCCATTCCA27.4074074074074066No Hit
GAGGACGAGTCCTTCCAGCTCCCCGACAATCTCGACGCCCTTGCCGGCAT27.4074074074074066No Hit
CCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTA13.7037037037037033No Hit
GAGTGGAATGGCATGGAATGGAAATCAATGGAATGGAATGGAATGGAAAC13.7037037037037033No Hit
GTGGTGGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAAT13.7037037037037033No Hit
GTATAGACATAAATGATTGCCAGCCATTATTCTGGAGGTTACAAGATATG13.7037037037037033No Hit
ATTCCATTCCATTCCCCTGCATTCGCGTTTATTCCTTTCAATTCCATTCC13.7037037037037033No Hit
GTCCCAAATAGAGTTCTTTCCAGCTTTCTGCATCTCAGTTTTGGCAACTC13.7037037037037033No Hit
GTAGTCTGAAAGAGAGTTGAGGAAGAGGCTGAGCAGAACCTATTATTTCC13.7037037037037033No Hit
GATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGTCCC13.7037037037037033No Hit
GATGGAGATTTTATTGGTATTCTACAAAGGAGGGGGGAAAAAACGACAGG13.7037037037037033No Hit
CCGGGGACAGTGCCGGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCAA13.7037037037037033No Hit
ATTCGATTCCATTCCACTCGATTTCACTCCATTCCATTCCATTGCATTCC13.7037037037037033No Hit
ACCCACGCCCAAAGGCGTCGAGTCGGTGTCGGCGCTACGACCGGTGCCAC13.7037037037037033No Hit
GCCTGGAGCCCCATCGTGCCAAGTTGCAGCTGGTCCACAGACCCATGAGC13.7037037037037033No Hit
TGTCCGGGCCGGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCGCAGGC13.7037037037037033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)