FastQCFastQC Report
Tue 10 May 2022
EGAF00003678228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112599
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT2480.2202506238954165No Hit
ACTCTAGACTGATACCTCCTCATGAAATTTCTGCAGACGTCGCGCCATCG1970.1749571488201494No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG1900.16874039733923038No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC1600.14209717670672029No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA1560.13854474728905228No Hit
GTAGAAGGTATACACAACCTGAGGTCCTCACAGATCTGCTGGGCAGTTTC1450.12877556639046528No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG1400.12433502961838028No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA1390.12344692226396325No Hit
GGTATACACAACCTGAGGTCCTCACAGATCTGCTGGGCAGTTTCTCCGGC1310.11634206342862724No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT1270.11278963401095923No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT1260.11190152665654224No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG1250.11101341930212524No Hit
TTATTCTCCTGAGAGGGGAGGACAGCAGAGGGAGTCAGGGGAGGGAGACT1240.11012531194770825No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA1220.10834909723887423No Hit
GTACATGGGAACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTA1210.10746098988445724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)