FastQCFastQC Report
Tue 10 May 2022
EGAF00003678229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110357
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT2530.2292559602018902No Hit
ACTCTAGACTGATACCTCCTCATGAAATTTCTGCAGACGTCGCGCCATCG2010.18213615810505904No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG1660.15042090669373034No Hit
GATTAAACTGCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTA1580.14317170637114093No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA1540.13954710620984623No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG1530.13864095616952254No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC1410.12776715568563843No Hit
GGTATACACAACCTGAGGTCCTCACAGATCTGCTGGGCAGTTTCTCCGGC1410.12776715568563843No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG1410.12776715568563843No Hit
GTAGAAGGTATACACAACCTGAGGTCCTCACAGATCTGCTGGGCAGTTTC1270.11508105512110696No Hit
GCATTACAGCCTGCAGGACACCTTGGGCCAGCTTGGTTTTACTCTAGATT1200.10873800483884122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)