FastQCFastQC Report
Tue 10 May 2022
EGAF00003678605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159801
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC2050.12828455391393045No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT1990.12452988404327882No Hit
GGGTTACACTGTCACCCAGGCTGGAGTACAGTGGCATGATCTCGGCTCAC1970.12327832741972829No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1690.10575653469002072No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT1680.10513075637824543No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1680.10513075637824543No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG1660.1038791997546949No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC1620.10137608650759382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)