FastQCFastQC Report
Tue 10 May 2022
EGAF00003678624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences636244
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC18170.28558226089361943No Hit
GTACATGGGATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC10930.17178943927172596No Hit
ATCTTGGGCTGTGACAAAGTCACATGGTTCACACGGCAGGCATACTCATC10360.16283061215508515No Hit
GTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCC8200.12888137255518323No Hit
GGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCC7150.11237826997189757No Hit
GCTTACATGTCTCGATCCCACTTAACTATCTTGGGCTGTGACAAAGTCAC7150.11237826997189757No Hit
GTGTAAGTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTG7050.11080654591634656No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC6840.10750592539968942No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6540.10279075323303638No Hit
ATTCAGTGTAGTACAAGAGATAGAAAGACCAGTCCTTGCTGAAAGACAAG6510.10231923601637108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)