FastQCFastQC Report
Tue 10 May 2022
EGAF00003678789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79933
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1800.22518859544868827No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1700.21267811792376115No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT1430.17889982860645792No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA1240.15512992130909636No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA1180.1476236347941401No Hit
GTACATGGGAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCA1130.14136839603167653No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG1100.1376152527741984No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG1090.13636420502170568No Hit
TTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAAT1030.1288579185067494No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC950.11884953648680771No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG930.11634744098182229No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT840.10508801120938786No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA840.10508801120938786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)