FastQCFastQC Report
Tue 10 May 2022
EGAF00003678791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003678791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77386
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA1670.21580130773008036No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1520.19641795673636056No Hit
GTACATGGGAGCCTGACTCCTGCCAGCCCTATGGAAGTTCCTTTTATGCA1300.16798904194557154No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG1180.1524823611505957No Hit
TTTTAATTCTGTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAAT1080.13956012715478253No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG1050.13568345695603856No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT970.125345669759388No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC910.11759232936190007No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA850.10983898896441216No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG850.10983898896441216No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT830.10725454216524953No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA820.10596231876566821No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG790.10208564856692426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)