FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003679485

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003679485
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35
Sequences flagged as poor quality0
Sequence length140
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCACGGACAGCGGGGTGCTGGTCGCCGCGCGTGAGAAGGGCTTCGCTGC25.714285714285714No Hit
CCTGGTTACCACTGCCACCTTCTCCATCGGCTCCACTGGCCTCGTGGTGT25.714285714285714No Hit
AAATAAAAGATTGGCTGGGCGTGGTGGTGCATGTCTGTTGTCCCAGCAAC25.714285714285714No Hit
ACCTAGATCTGAAAAGTGAAGGGGGATCAACCTAAAATATGTAGCTTTGT25.714285714285714No Hit
ACTCTATGGACCTCTCATGCTGGTCTTCACTCTGGTTGCTATCCTACTCC12.857142857142857No Hit
CTCGGCATCCATAACGCATTCGTCGCCTGGGGCCTGCTCTACGAACAACT12.857142857142857No Hit
CGGCCGCCCCGGTCGGTCTGCACGACGGGGATGGCGCCGGGGTTCAGGAT12.857142857142857No Hit
ATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGG12.857142857142857No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG12.857142857142857No Hit
GATCTTGGTCCGTGTGAAAAAATTCATGATGAAAATCTACGAAAACAGTA12.857142857142857No Hit
CTTCTCAACTGTGGGGTTGCGTGCCCGGGGAGCTGCCCTCGCCAGGGAAG12.857142857142857No Hit
GGGTAAACATCGCCACCAGCAACACCATGATCGACAAGGCAATATTGAAG12.857142857142857No Hit
CAATGATACCATTCGATTCCATTTGATGATGATTTCAATCAATTTTATTC12.857142857142857No Hit
AGCCGATGTGCCGCTCAATCGCGCGGCAGTCGGGCACGAAATGGAAGCCG12.857142857142857No Hit
CTGTGCGTCGAGTTGCCGATGGCCTACCTGTTCAATGCGCATTTCGGTCT12.857142857142857No Hit
GATGATGACTCCTTTCATTTCCATTCGATGATGATTCCATTCGTTTCCAT12.857142857142857No Hit
GGTGTAGATTTTCCACGAGTTAGCCTGTTCGCTTCAGATATGCAGGATGA12.857142857142857No Hit
ATGTAGTTCGTCCAAAGCGGACGTCATGCTGTTCGGCCCGGCGGTTCCGG12.857142857142857No Hit
AGACTAAACATACTAGGCTCCAGGGAGGCATTCCATCTCAGTTACAACTC12.857142857142857No Hit
CCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGG12.857142857142857No Hit
ACCTAGATCTGAAAAGTGAAGTGGGATCAACCTAAAAAATGTAGCTTTGT12.857142857142857No Hit
GATCACCAGCGACGATGAGATGTTCCTCAGCCTTGAGCTCGCTGTAGCTG12.857142857142857No Hit
ACAGTGTTTTGCTCGTGTTGCTCAGGCTGGAGTGCAGTGGCGTGATCTCG12.857142857142857No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC12.857142857142857No Hit
CTTGTGTCGAGGGCTGACTTTCAATAGATCGCAGCGAGGGAGCTGCTCTG12.857142857142857No Hit
GCTTTCAGCAGATAAATCACAGCAGAAATAGAATCACCCTAGGACTTTCA12.857142857142857No Hit
GACTCGAATGGAATAATCATTGAACGGAATCGAATGGAATCATCATCGGA12.857142857142857No Hit
CTTTCTTCATGTGATAACAACTTTAGACCATCAGAACCATAGCCCTTGTG12.857142857142857No Hit
NTGTGCGTCGAGTTGCCGATGGCCTACCTGTTCAATGCGCATTTCGGTCT12.857142857142857No Hit
TAACAGCAGTAATATTTACAACCAATGTCTAATTGGCTGTAGCTTGCTTT12.857142857142857No Hit
TGTGCCATCAAAACCTCCTACTGCCATGAGCTGTCCATTGACCACTGCCA12.857142857142857No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)