FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003679486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003679486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGAAATGATCATGGCT25.714285714285714No Hit
GGGTAAAGGCAGGGTAGGAGGGCTACTGTTTTTCATAATAAACCTTATGG25.714285714285714No Hit
CCCATGATGTCGTACGGACCAGCGACAAATCAATGCCTTGCTGGGCAGCG25.714285714285714No Hit
GAGCCTGCATCTCGCCCCTCTGCCTGGCCCAGCTTAGACGTAGGCACTGC25.714285714285714No Hit
GAGGCAGGCAGATTACCTGAGGCCAGGAGCTCGAGACCAGCCAGGCCAAC12.857142857142857No Hit
TTCCATCACACCAACCGTTTGATCTGCTTATGCCGCCATACCAACCGGTA12.857142857142857No Hit
NTCCATCACACCAACCGTTTGATCTGCTTATGCCGCCATACCAACCGGTA12.857142857142857No Hit
CTTTCAGTTCTGCTTGCTGTCCGCACCGCTGCGTTACCCGGAACCGCCGG12.857142857142857No Hit
GGCTCCACATACTTCACAAACTTCCATTTGTTTTTCTTGTGCAGCAAAGC12.857142857142857No Hit
GAATTATCATCGAATGGAATCGAATGGAAACAACATCAAACGGAAAAAAA12.857142857142857No Hit
GCTTTCAAGTGGGAGCTTTTGGTGTAAACTTTCCTGCAGCCGTTAAAGTG12.857142857142857No Hit
AGGGTGGACACTGCACGCTCTGGCATGATGGGATGGCGACCGGGCAAGCT12.857142857142857No Hit
CTCCTGTACACATCATAGCCACTAGCAAAAGTTTACATTCCTATGCACGC12.857142857142857No Hit
ACTTTGAGACCTGTTGGTGATTAGCAGGTGATTTCTACTTGCAGACAAGG12.857142857142857No Hit
GCTGGGCACTGCTCTCCGCATCGCTGCTGTCGGGCTGGCTGTTCCTCGAT12.857142857142857No Hit
TGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACA12.857142857142857No Hit
TTTGAAAACACACGGAGATACTGCAAACATACAGAAACACATGCAAATTT12.857142857142857No Hit
GTATCGCGCGCTGTCCTCGCACCCGATGGTCAAGGTCGTGCTTTGAGCTG12.857142857142857No Hit
ATTCAATTCCATTCAATCATGATCCCTTTCGAGTCCATTCAATGATTCCA12.857142857142857No Hit
GCTCTGCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTCTACGAATGG12.857142857142857No Hit
CAGCCGCTGTGTGGGGCCCACGGTCCGAGACACCAACACTGCTACCATGC12.857142857142857No Hit
TGCGCAGCGATCGCAAGTTCGTGGCCATGCCCTCGAAGGTGGTCGACACG12.857142857142857No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACC12.857142857142857No Hit
GTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAG12.857142857142857No Hit
CCGGCCCCGCCGGCGAAGAGATCCACTGCGACGAGTACGGCCGCGTAAAA12.857142857142857No Hit
AGCTAAAGGAATCAACATCGAATGAATCGAATGGAAACACCATCGAATTG12.857142857142857No Hit
TCTCAACACAGTGGAACGTTACAATCCTCAGGAAAACAGATGGCACACTA12.857142857142857No Hit
ATCCAGCGCTTCTGGTTGTCCTGCAGGCGATCGCCCGGACCCTTCACTTC12.857142857142857No Hit
CCGTTTAAAATGCACCCACACAAGAATAGAAAACAAATAACCCGTCAACC12.857142857142857No Hit
GCTAAAAGGCAGGGTAGGAGTGCTACTGTTTTTCATAATAAACCATATGG12.857142857142857No Hit
CGTCTGGCTGGTGGACAGCGCCCTGTACAACCTACTCATCTTCCGGTGCC12.857142857142857No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)