FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003679593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003679593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length140
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCAAAAGCAAGGTAGTTGCTGTCCCAAAAAGCCGAAAGCCTCTAGTCC212.5No Hit
GCAGGCCCCTTCGCCCTATTCTTCATAGCCGAATACACAAACATTATTAT212.5No Hit
TTCTATATCTTCGAGCAGGGCTGTCCGGACATCAGGCACAGCAGCTGCAC16.25No Hit
CTTGGAGGGGAAGCGAAATCCTCAGTCTGACACCCGCTCTGCCTATGGAA16.25No Hit
GGCTACTACGTGCGCGATATGACAAGTTAACAAGACGGCGCAGGTTGATG16.25No Hit
GTTCTTCTTCTAAAGCTGTTTACAAAGTCCCCCCTTAGAGCTGAAAATCC16.25No Hit
TTCACATCCCATGGGAAACCGCCCCCCCGGGCCTTGGAGAATGGGGGTCC16.25No Hit
TCCCTGTACCCTGCAAGGGTCTGAACTGAATTCCATTCATGGTTTCCAAG16.25No Hit
GTTTAATCAAATGCCATTTTTGGGCTAAATCTGAGCCAGCAGGAAAAGGG16.25No Hit
TATCTATACACATAACTTGCAGATGAATCATGCCTGAGTAACATGGAGGT16.25No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG16.25No Hit
TACTTATCTCTCTGTGCTGTGGAAGCAACAGGAATCAAGAGCTGCCCTCC16.25No Hit
GCTGTCAAGAGTCCCTGAAGATGTCCCATCAATGGAACGCATACAGCAGC16.25No Hit
CTCGCTGGGCGGCGGCACGGGCTCAGGCATGGGCACGCTGCTCATCAGCA16.25No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)