FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003679594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003679594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length140
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAGAGATCCTGCAGCTCCTGAAAGGCAAGCTGGTGGTGGGTCATGAC212.5No Hit
ATGCTAGGGTGAGTGGTAGGAAGTTTTTTCATAGGAGGTGTATGAGTTGG212.5No Hit
TGACAGGGCACAGTGGACGACCTTCCAAATCAAAGCAAGTAACTAGGGGT16.25No Hit
GCATAGGAGACTCAACTCCTCAGCAACAAAGCAGTCCCTTAAGAGAAAAT16.25No Hit
TTGCCTAGGCTGGAGTGCAATGACATGATCTCGGCACACTGCAACCTCCA16.25No Hit
GAACTAGCCTATCGCAGACGGTATCAACAGGAACATCCTCGTGTTAGATA16.25No Hit
TCTTTCCCCTGACCATAAAAGCAGCCGCTGGCTGCTGGGCCCTACCAAGC16.25No Hit
GCTTGAGTCCTCTTCAGGGTTAGCTCTCAGAAACACAATCTGCAGAACAG16.25No Hit
GTGTGTACGCGCTTCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTT16.25No Hit
AGTTAGCAGTAAGAGTCCGTGCTTTCACATTCCTATCAGACAGATCTGAG16.25No Hit
GCTCCTGGATCCGCTCCTGCCTGCGCCCGCAGCTGACCTTCTCCTGCCAC16.25No Hit
CGGCCACCTTCACGTTGTTGGGAATCCACTCCACGAAGTAGCTGCTGTTC16.25No Hit
TCAGCGTACTCTTTTAGAGAAATAGAAGATTGTCGGCAGAAACAGCCCAG16.25No Hit
GATTGAGATTGAACAACTTTTGGCAAGGCTTACAGGGGTAAATGATAAAA16.25No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)