FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003679699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003679699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3705
Sequences flagged as poor quality0
Sequence length146
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT190.5128205128205128No Hit
GACCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTT160.43184885290148445No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC150.4048582995951417No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAG140.3778677462887989No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA130.3508771929824561No Hit
GTCCTACACTATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCT120.32388663967611336No Hit
CGTTTATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTC110.2968960863697706No Hit
ATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGCTCAACGCTTGA110.2968960863697706No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA100.2699055330634278No Hit
GAATTAAATCCGCTTCTTTTACTTCCTCAAGCGTTGAGCGGAATGCAGCA100.2699055330634278No Hit
CCTCAAGCAGCCGAAGCACTGTTTTTTCATGTCCCGCATAATCCTCATTT100.2699055330634278No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA90.24291497975708504No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT80.21592442645074222No Hit
ACATTGATTGCTGCATTCCGCTCAACGCTTGAGGAAGTAAAAGAAGCGGA80.21592442645074222No Hit
CTTCATAGCTGTCAGCACTCGTCAGGCGGTTGAACCATGTTGATTTCCCT80.21592442645074222No Hit
TAGTAGCCTAGAGCGCCAGGGGCGGAAATTCGCCTGAAAAGTTTTGCCGG80.21592442645074222No Hit
ATTGTAAGCCGTCAGCATCGGGATATCATCTGCTTCAAGCTCCTCAAGCA80.21592442645074222No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT80.21592442645074222No Hit
CTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCG80.21592442645074222No Hit
GCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGC80.21592442645074222No Hit
GAATAAATCCTACTGTATCTGAAAGAAGAACACTGTAGCCGCTTGGCAGG70.18893387314439944No Hit
CCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGA70.18893387314439944No Hit
GGTTGATGCTTCCAATAAACATGATCTTTCTGCTCCGCTGAGAAGTACAC70.18893387314439944No Hit
GGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGATCCCGGAAGATACGCTC70.18893387314439944No Hit
ATCCTCATTTGAAGAATCAATTAAATGCAGAATTAAATCCGCTTCTTTTA70.18893387314439944No Hit
ATCCTGAATAAATCCTACTGTATCTGAAAGAAGAACACTGTAGCCGCTTG70.18893387314439944No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT70.18893387314439944No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG70.18893387314439944No Hit
CCATAATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGA70.18893387314439944No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT70.18893387314439944No Hit
GCTGTAAAGAGGGGCGTTGAGTCCGTCCGACTTCACTGCCCCCTTTCAGC60.16194331983805668No Hit
CTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGGAAGATCCTGAA60.16194331983805668No Hit
TCTTTAAAGGCTGCAGCGTCGTCCTCAAATTTCGCACTGACCATAATGTG60.16194331983805668No Hit
GTGTACACCCTTTTGAGCAATGATTGCACAACCTGCGATCACCTTATACA60.16194331983805668No Hit
CAGCTATGAAGAAGACCTCCTGTTTGCCACGCTGGACCCGATGACCAGAA60.16194331983805668No Hit
CCATAGAAGCCGATACCGTGAAAGAAGAAAGAAAAACGGTGTGCTTCAAA60.16194331983805668No Hit
CATTTGAAGAATCAATTAAATGCAGAATTAAATCCGCTTCTTTTACTTCC60.16194331983805668No Hit
ACGCAGAGTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA60.16194331983805668No Hit
GCCTAGATGTGATACACGTTTCTGGAAACTGCCTCGTCATGCGACTGTTC60.16194331983805668No Hit
GCGCACTACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTT60.16194331983805668No Hit
GATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTTCCGCCCCTGG60.16194331983805668No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA60.16194331983805668No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC60.16194331983805668No Hit
GATTAGCTCTTCTTTGATTAGCATGAAACTCCAAGGTCCGGGGGGGTCAC60.16194331983805668No Hit
GCTCAACGCTTGAGGAAGTAAAAGAAGCGGATTTAATTCTGCATTTAATT60.16194331983805668No Hit
CTTACACACCGGACGCTTGGATCAGTGGGAAGTGCTCACGCGCGGAGCCC60.16194331983805668No Hit
CAGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTTCGCCTTGACCGCG50.1349527665317139No Hit
CTTCTGGGTCTGCTGACAAAGCATGATCAGGACCTTCCATATTTTTATCT50.1349527665317139No Hit
CAGTAGGATTTATTCAGGATCTTCCGACGACATTGATTGCTGCATTCCGC50.1349527665317139No Hit
GTTAAGAGCCTCCGCCCGTCTCTGGGACTATGGACGGGCACGCTCATATC50.1349527665317139No Hit
CCTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGGAAGATCCTGA50.1349527665317139No Hit
GTCTTCTTCATAGCTGTCAGCACTCGTCAGGCGGTTGAACCATGTTGATT50.1349527665317139No Hit
TCGGAATATCATCTGCTTCAAGCTCCTCAAGCAGCCGAAGCACTGTTTTT50.1349527665317139No Hit
CTTGTTAACTTGTCATATCGCGCACGTAGTAGCCTAGAGCGCCAGGGGCG50.1349527665317139No Hit
CTTCCTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGGAAGATCC50.1349527665317139No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.1349527665317139No Hit
ATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTG50.1349527665317139No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC50.1349527665317139No Hit
GTAAAGAGGGGCGTTGAGTCCGTCCGACTTCACTGCCCCCTTTCAGCCTT50.1349527665317139No Hit
CGGCTATACAAACGCAGGGAAATCAACATGGTTCAACCGCCTGACGAGTG50.1349527665317139No Hit
ATACTATCTCGGCAATAGGATTGTAGCCCAGGATGAGTCCCTCAGCGTGA50.1349527665317139No Hit
AACCAGATGTGTGCTAGCCCGTCGAGACTGAAAGGCTATAACCCGCAGAC50.1349527665317139No Hit
AACCAGATGTGTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCGCAGAC50.1349527665317139No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGCGGTACTGTCTCTTATACACA50.1349527665317139No Hit
ATACAGTAGGATTTATTCAGGATCTTCCGACGACATTGATTGCTGCATTC50.1349527665317139No Hit
CACTAGAAGTCGACGAACAACGAAGAGCGACGATGCCCGTTTCAGGTGGT50.1349527665317139No Hit
TAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGCTGCAG50.1349527665317139No Hit
ATTTGAAGCACACCGTTTTTCTTTCTTCTTTCACGGTATCGGCTTCTATG50.1349527665317139No Hit
AGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTTCCG50.1349527665317139No Hit
CATCTAGGCATGGAATCTTATGCCAGCTAACGGAACAAGCTTTGTGCCAT50.1349527665317139No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG50.1349527665317139No Hit
CCTCCTGTTTGTCACGCTGGACCCGATGACCAGAAAAATGGTCCTGCCAA50.1349527665317139No Hit
ATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAATTT50.1349527665317139No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAA50.1349527665317139No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG50.1349527665317139No Hit
ATCGCAGACGGTATCAACAGGAACATCCTCGTGTTAGATATTGAGGCTGC40.10796221322537111No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA40.10796221322537111Clontech Universal Primer Mix Long (95% over 21bp)
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA40.10796221322537111No Hit
TCCGACGACATTGATTGCTGCATTCCGCTCAACGCTTGAGGAAGTAAAAG40.10796221322537111No Hit
GTATGCCCCTGTGTTATTGCAGCGTCTCGATTAGGGGGAAACCTTGTCAC40.10796221322537111No Hit
TCGTTACGCTTACACACCGGACGCTTGGATCAGTGGGAAGTGCTCACGCG40.10796221322537111No Hit
ACCTACAACTTGCGCCAATTATCGAGCTGGTAGACGACCAGCGCTGACGA40.10796221322537111No Hit
GTACATGGGTGACCGCACGCAATTGATATTAGATATTTTTGCAAAGCGGG40.10796221322537111No Hit
ACGCAGAGTACATGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCT40.10796221322537111No Hit
TACTTTAGGTGGGCCTTGGCTTCCTTCCGCAGTCAAAACCGCGCAATTAT40.10796221322537111No Hit
GCTTGAGGAGCTTGAAGCAGATGATATCCCGATGCTGACGGCTTACAATA40.10796221322537111No Hit
AATCTATATTACTCACAATATCCTAAAAACGATCAGCCGGCAGGTTCATT40.10796221322537111No Hit
ATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACCGCCCTTAGAC40.10796221322537111No Hit
ATTAAATGCAGAATTAAATCCGCTTCTTTTACTTCCTCAAGCGTTGAGCG40.10796221322537111No Hit
GAATATCATCTGCTTCAAGCTCCTCAAGCAGCCGAAGCACTGTTTTTTCA40.10796221322537111No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA40.10796221322537111No Hit
ATGCGGGACATGAAAAAACAGTGCTTCGGCTGCTTGAGGAGCTTGAAGCA40.10796221322537111No Hit
GCGCCATATCATATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGA40.10796221322537111No Hit
CCCCGAGGAGCGGACTTGTAAGGACCGCCGCTTTCGCTCGGGTCTGCGGG40.10796221322537111No Hit
CTGGTTGACTAGGCGCATAGTCGCCATTCACAGATTTGCTCGGCAATCAG40.10796221322537111No Hit
GTGATACACGTTTCTGGAAACTGCCTCGTCATGCGACTGTTCCCCGGGGT40.10796221322537111No Hit
GTGTTCTTCTTTCAGATACAGTAGGATTTATTCAGGATCTTCCGACGACA40.10796221322537111No Hit
GACTTGCGAAAAACAGGCGTTCTGGGTTTGACCATTTGGTCCAAAACGGA40.10796221322537111No Hit
GATGATATCCCGATGCTGACGGCTTACAATAAACGTGATCAAAAACTGCC40.10796221322537111No Hit
TTCAGATACAGTAGGATTTATTCAGGATCTTCCGACGACATTGATTGCTG40.10796221322537111No Hit
AAGAAGAACACTGTAGCCGCTTGGCAGGACCATTTTTCTGGTCATCGGGT40.10796221322537111No Hit
CTATACGCGATGGATCGAGGTCATGACTGGACACTGCATCGGAAGACACT40.10796221322537111No Hit
ATTCTGCATTTAATTGATTCTTCAAATGAGGATTATGCGGGACATGAAAA40.10796221322537111No Hit
TCTCAGCGGAGCAGAAAGATCATGTTTATTGGAAGCATCAACCTGCGCCG40.10796221322537111No Hit
GTATAGGGACGCCCCCTGCTCGCGTTACTGCCAAGCGAGCGTGGTGTGGT40.10796221322537111No Hit
TGTTGATACCGTCTGCGATAGGCTAGTTCATAAACGAGGGGCGATGCCCG40.10796221322537111No Hit
GCTGACAGCTATGAAGAAGACCTCCTGTTTGCCACGCTGGACCCGATGAC40.10796221322537111No Hit
CACACACACTGATTCAGGCTCTGGGCTGCTCCCCGTTCGCTCGCCGCTAC40.10796221322537111No Hit
CTTATAGGGGACGAACCCGGGGCTGCGCGTGACGAACCACTGAGTGGCCG40.10796221322537111No Hit
TTTTTCTGGTCATCGGGTCCAGCGTGGCAAACAGGAGGTCTTCTTCATAG40.10796221322537111No Hit
TCCCCGAGGAGCGGACTTGTAAGGACCGCCGCTTTCGCTCGGGTCTGCGG40.10796221322537111No Hit
GCTTAGAGCGTATCTTCCGGGATCGGGCAAAGGGGCAACTCGAGCTAATC40.10796221322537111No Hit
ATCCTACTGTATCTGAAAGAAGAACACTGTAGCCGCTTGGCAGGACCATT40.10796221322537111No Hit
CCTGTTTGCCACGCTGGACCCGATGACCAGAAAAATGGTCCTGCCAAGCG40.10796221322537111No Hit
TATTAATAGTTGATGTAGTTCTAAAGCGGGGTTGGTAAGATGCTCCATTT40.10796221322537111No Hit
ATCTTATGCCAGCTAACGGAACAAGCTTTGTGCCATTCGGACCTACCGTA40.10796221322537111No Hit
TTACAAGTCCGCTCCTCGGGGAGCTTGATTGATAATTCTGTATAAGGTGA40.10796221322537111No Hit
GCCACGAGTCACGGGGTCTAACGCCTACCAGTACTGATTGCCGAGCAAAT40.10796221322537111No Hit
ACCTGCGATCACCTTATACAGAATTATCAATCAAGCTCCCCGAGGAGCGG40.10796221322537111No Hit
CCTATTTTCGATCAAGGATTCGTAAATCCACCTCTTAGCAAGAGATGAGG40.10796221322537111No Hit
GGATGAGTCCCTCAGCGTGACGCAGTAAACTAGTAGCATCCCGATCTTTT40.10796221322537111No Hit
ATGTGATCCCTTCCGGCGGTCGGTATAAAATCAGGCAGTTTTTGATCACG40.10796221322537111No Hit
CAACAGGAACATCCTCGTGTTAGATATTGAGGCTGCTTCGTGTCGGCACG40.10796221322537111No Hit
ATTATCCCCGTCCTGATTTACTGGACTCGCAACGTGGGTCCATCAGTTGT40.10796221322537111No Hit
CATTCAAATTGACCTCCCTCAGGAAGCTAAGAAATACTATCTCGGCAATA40.10796221322537111No Hit
TATCAACGCAGAGTACATGGGGTGCAGGCCAGCACCATCAGCAGCCAGCG40.10796221322537111No Hit
ATACAGAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGACCGC40.10796221322537111No Hit
GTACATGGGAACCGCCTGACGAGTGCTGACAGCTATGAAGAAGACCTCCT40.10796221322537111No Hit
TCTCTGGGACTATGGACGGGCACGCTCATATCAGGCTATATTTGGTCCGG40.10796221322537111No Hit
GTCTCAGGGGATCTGCATATGTTTGCAGCATACTTTAGGTGGGCCTTGGC40.10796221322537111No Hit
CCCTATACGCGATGGATCGAGGTCATGACTGGACACTGCATCGGAAGACA40.10796221322537111No Hit
ATGTTAGATCATCTATGTAGTGGATCTGAGAGATCACGTGGACCAAAGCT40.10796221322537111No Hit
GGACCCGATGACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTC40.10796221322537111No Hit
GTACATGGGTTCGCCATAGAAGCCGATACCGTGAAAGAAGAAAGAAAAAC40.10796221322537111No Hit

[FAIL]Adapter Content

Adapter graph