FastQCFastQC Report
Tue 10 May 2022
EGAF00003679959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003679959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77748
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA3570.4591757987343726No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT3060.3935792560580336No Hit
ATCTTGGATATGATATGGCGCACTACACATGCTAGCCGCTGGGGAGATTA1470.18907238771415344No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT1360.1749241138035705No Hit
CTATAAATGTGCTAAGTTATTTGAGACTTCCTCAGTTTAAAAAGTGGGTT1270.16334825333127542No Hit
ATCTAATTCACCTCCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAA1250.1607758398929876No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA1220.1569172197355559No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC1200.1543448062972681No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG1020.13119308535267787No Hit
GTTAATAATTCTGGCAATTCGTCTCCACACTAGAAGTCGACGAACAACGA980.1260482584761023No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC940.12090343159952667No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG930.11961722488038277No Hit
GTACATGGGAGGACCGGTGTGGTCACGGATGGTGTGAAGCACTCCATGAA930.11961722488038277No Hit
GTACATGGGAGACGGTATCAACAGGAACATCCTCGTGTTAGATATTGAGG910.11704481144209497No Hit
ACACATGCTAGCCGCTGGGGAGATTAGCTCGAGTTGCCCCTTTGCCCGAT910.11704481144209497No Hit
GTACATGGGATGGTCAGTAATTCCTGGAGGAATAGGTACCAAGAAAAAAA860.11061377784637547No Hit
CCTTTACACAGAGTGAGTGGTTCAGTGAAGATAAAGTAGACAGTTATTCA840.10804136440808766No Hit
AGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTC810.10418274425065596No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA810.10418274425065596No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG780.10032412409322426No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)