FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003679963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003679963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAGGCCTTCTACGCGGGGAAGCCGGTCATCTGCGCGCCCGACTCCGG47.6923076923076925No Hit
CTTCTCGGCGATGCCAGCTTTCTCCTCCTCGGAAATGTTTTTGGCAACTG35.769230769230769No Hit
TGAAAAGACGACGCATGGCTTCTGCTGAAAGTAAAATGGCTGAGCCGCCG23.8461538461538463No Hit
GGTCGTGCGCTTGATCATAGTAGCTCGAAGAGGGGTCATTTGGATGTCGG23.8461538461538463No Hit
GGCGACGGGGTCTGGGCGTACAACCTCGCCGTCGTCGTCGACGATGCCGA23.8461538461538463No Hit
CATCACCGTTGTGCGTCCCGAATCGGGTCGAACCGAAGAGCGCGTCGCAC23.8461538461538463No Hit
GGCGTGGACGAGACCATCAACCTGGATCCGGACACTCTGGCCAGCATCTT23.8461538461538463No Hit
GAACTTGGCGGAAATGAAGCGAGCTGCGATGTTGAGGATTGCGATGATGA23.8461538461538463No Hit
GCCGGAAGGTCCGGTAGTCGCGAGCGCAGCAGTGGAGCTCGCTGCTGAGG23.8461538461538463No Hit
GGTTGTGAATGCCCAGACTGCTCTCCTTTGTATGATATCCACTACTGCGC11.9230769230769231No Hit
ACAAGGAGAAATCACAACTCTAAGTGTACAGCCTGATAGGCGGGATCTAA11.9230769230769231No Hit
GTCCCGTAGAGCGCGTCGTACAAGCTGCCCCAGCGCGCGTTGGCGGCGTT11.9230769230769231No Hit
GCTGCGGCAACGGCTCGTCGAGCTCCTGCCCCGGGCCGGTGGACAGGCGG11.9230769230769231No Hit
GTGGTCGCCGATACCGTTCCCAGGGACGAAGAGGCGCTAGCGGGCGTGGA11.9230769230769231No Hit
CTTCCGCATCCGCCAGCTGGTCGCCCGGCTTGCGCCCGGCGAGCGGATCG11.9230769230769231No Hit
TTTAAATCTTCCGCAATGGTGCCGCGCAGGTAGTTGCTTTCAAGCTTCAT11.9230769230769231No Hit
GGATACACTCCCGCCCGTGAGCAGGGTGATAGACTGCCACCGCTGCCCAC11.9230769230769231No Hit
GGTTTAGCCCATGGAATTAATGATTGGACGGGTGGTGAAATCCCACGGCA11.9230769230769231No Hit
ACAAGGAGAAATCACAACTCTAAGTGTACAGACTGATAGGCGGGATCTAA11.9230769230769231No Hit
CCACTAGCAGGCCGCAATAAGGAATCCACCGTGAGCGTCACGCAGCCCGA11.9230769230769231No Hit
CACCAAGGAAGCAGAGGCTTCCGGCGACGTCGCCGTTGGCACGGGCGCCT11.9230769230769231No Hit
GGCCCTCCCCGAGCGGTCGCGGACGGGGACGCCGAAAACCTACAGGACTG11.9230769230769231No Hit
GCGGAGGTGACGTTGGGAAAGGTGAAGCATGGGAGTAAGCAGAGGCAGAG11.9230769230769231No Hit
GGCGAGGACGAGACCATCAACCTGGATCCGGACACTCTGGCCAGCATCTT11.9230769230769231No Hit
CTCGTACAGCTGCCACCAACCGCCCTGCTTCCACACGACGACGGTGACGG11.9230769230769231No Hit
CTCAAAATGTCTTCCTCTGCCGTTGTTCGAGTCGAAGAACCAGAGTCCGC11.9230769230769231No Hit
GTGCTCCGGGTCTCCGGAGTGCTGGAGCGGGCCGGGGAGCTGCCGGCGGA11.9230769230769231No Hit
TCATAGACGTCGGCACCGAGGACGGCATAGAGGACGACCAGCCCGTGGTG11.9230769230769231No Hit
GTCGAAGCATGTGGTGACACTGCATGGGGACATGTCCACGGTGGTGTGCC11.9230769230769231No Hit
CTTGAAGTAGGAAGTCAGCGTTACCTGATTCTGGCGCTCCGGGGTGATGG11.9230769230769231No Hit
ATCCGGGCTGTCCCACGACCAGGAGTGGCAGGTCGGGCGCACCGGGCGAC11.9230769230769231No Hit
CAGCAACGACAGGGCTCGGAACGGGGGTCGATATTCCCGGTATCAGCGTA11.9230769230769231No Hit
CTCGTGTGGTCACCTTCGGGGGTAGAGCACTGTTTTGGCTAGGGGGTCAT11.9230769230769231No Hit
TGTATGGCATGGTCAACCTCTGCGACCGGGTCGACATCACCGTGGAGCGC11.9230769230769231No Hit
TGTCGATATTTCAGCTCATAGCGGAAGCAGATTGGAAGACTGGGCTCTCT11.9230769230769231No Hit
ATAGATCTAGGAGCGTTTCGTGCTCACTCGCGCGGAGTAGACGAAACGAT11.9230769230769231No Hit
CGGGTCACCCTACGTCGGGCCGGGACCGCCGCTGGCGGGGGCGGCGGCCG11.9230769230769231No Hit
AGTGGGAACCGTCCAGCCCACCTGCTAGGTCACTCGATGGGTGGCAAAGT11.9230769230769231No Hit
GTGCACAACTATCAGGCTCTTGCCGCCATCGCCGGGGCGTCCACGCCGCG11.9230769230769231No Hit
CGATGTGACCGACCTCGTCAAGATAATTACGGCACTGCGTCGCGAGCACC11.9230769230769231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)