FastQCFastQC Report
Tue 10 May 2022
EGAF00003680217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003680217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences366637
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA4950.13501092361109218No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG4320.11782771515149862No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA3830.10446299746070364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)