FastQCFastQC Report
Tue 7 May 2024
EGAF00003680352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003680352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59608
Total Bases8.3 Mbp
Sequences flagged as poor quality0
Sequence length140
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC680.11407864716145484No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG630.10569051134075964No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA610.10233525701248153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)