FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003680587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003680587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences159
Sequences flagged as poor quality0
Sequence length100
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTGAGGGCGGCCACGCCGCCTGCAGCGTCCGGGCTCGGGGCCGGCGCG42.515723270440252No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG21.257861635220126Clontech Universal Primer Mix Long (96% over 26bp)
CACCCACAGGGACACGGCCAGAGGCCTCAACTGACTCAGCCTCTAGTCGC21.257861635220126No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG21.257861635220126Clontech Universal Primer Mix Long (96% over 26bp)
GGTTGATGACGGAGCCCGTGGCCACCCCCACGTCCACCACATCGCCCACG21.257861635220126No Hit
CAGTCAATGAGCGAGAAACACATCCTGGTGGTGGACGATTCCACGTCGAT21.257861635220126No Hit
CCCTTCGATATGGAACGGCGCGCTGATGGCCGAGAGGATGCGCTCGGCCA21.257861635220126No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGTCTCTTATAC21.257861635220126Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCGGCACACCCTGGCAGCATGCCGGCGCCCGCGCGCATGATCGATTGGCC21.257861635220126No Hit
CCAGAATCGGCTGCATCAGGCCCTGCGCCCGGATACTCGCGGCGAGCTCC21.257861635220126No Hit
TCATGAGCCAGTTCTTGCGCGGCGATTCCGAGATGGTGGAGGCGCCGCAT21.257861635220126No Hit
TCACAGCGACCGCGCTGGCGGGCCTGCATGCCGCCACGGCCTTCACCTTC10.628930817610063No Hit
CATCCAGGGCATGTTTAGAGAAGTGATCAAGACTCCTTCTTGGGGGGTAC10.628930817610063No Hit
CGACGGCACCATCTACCAGCGTCCGTTCGGCGGCCATACGTCGAACTACG10.628930817610063No Hit
GAACAGCACGTCGCAGCCGGCCGAGCGCAGCTTCTCGCAGTCGCTCTCCC10.628930817610063No Hit
ACACTCTTCCCTACACGACGCGCTTGCCTCAGATTCTGTCGGTACCAGAG10.628930817610063No Hit
CCGGTGGCGACGCCCTATAAGCCCCAATCCGCCAAGGAAGAGGTCAAAAC10.628930817610063No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGGTAGTCTCGGTGGCGCCTACA10.628930817610063Illumina Single End PCR Primer 1 (96% over 29bp)
AAGCCGAACATGATCGCGACCACGACGGCCAGCTTGCCGAGCATGGAACG10.628930817610063No Hit
GACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATA10.628930817610063No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTATTCGTTTATACCACAGCTTA10.628930817610063No Hit
CCGCAGCTACGACACGCCGCCGCCCGCGCTGGAGCCCGGCGCCGACAACG10.628930817610063No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.628930817610063Clontech Universal Primer Mix Long (96% over 26bp)
TTCCCAACCTGTTCACGAGACGATGACCATGAAGCTCTATTACTCCGCTG10.628930817610063No Hit
CTCGAGCACCGAGCGAGGCACCAGCGCCACACCAATGCCGGCGGCCGCGC10.628930817610063No Hit
CCTCGACGTGGCGGCGCGACACCGCCCGCGAGGAGAGCGCCAGCGCGCAT10.628930817610063No Hit
GGTATCAACGCAGAGTACATGGGGAACGGGACCACGATCTACCTCTTTCC10.628930817610063No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTTGCAGGGAGGAAAAAGGAAGGGAAACTGTCTGAGCGAAGCGAGTTTTT10.628930817610063No Hit
GCTTAGGCTGCACCTGGCGTCCAGGCGCCCGACAGGATCTTCTCGAGCCA10.628930817610063No Hit
AGGCACGACATGCCTATTGGTCGGCGCCGGGCTGGGGGGTATCGCCCTTG10.628930817610063No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATGCGTTTAAA10.628930817610063No Hit
TATCAACGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATATGC10.628930817610063No Hit
GATCGGAAGAGCACGTGTAGGGAAGAGTGATCGGTGGCCGATTCCCATGT10.628930817610063No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTA10.628930817610063No Hit
ATTTGGATCAATAGCGCGACGGGATCACCGTCGCCCTCCTCCCGCTTCGC10.628930817610063No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.628930817610063Clontech Universal Primer Mix Long (96% over 26bp)
CGCTGGAACTGGGCAAGGTGTTTGACGCCATCAAGAACGGCGAGATCAAC10.628930817610063No Hit
TTCCACGTCGCTGTGGTCGTCGCCCTCACCCCACGGCATGGCGGATTCGC10.628930817610063No Hit
GTTTATATTTCTAACTGTGGGAGTGCTTTGCAGAAGATGTGCTGTTTGGG10.628930817610063No Hit
GTCGTCGAGGGCGATCATTGTCAAAGCGGATTTGGAGAATCATCAAAGCA10.628930817610063No Hit
GTACATGGGAAGCAGTGGTATCAACGAAAAAAAAAAAAAAAAAAAAAAAA10.628930817610063No Hit
TGTAGAACGTGAACACCTTGTCGTGCTCGCTATGCTCCAGCAGCTCGTTG10.628930817610063No Hit
GGGAAGCAGTGGTATCAACGCAGAGCTTCCCATGTACTCTGCGTTGATAC10.628930817610063Clontech Universal Primer Mix Long (96% over 25bp)
GGTATCAACGCAGAGTACATGGGGAACGGGACCACGATCTACAACTTTCC10.628930817610063No Hit
ATCAGGCGTCGATCGTCTTTTCTGCGATCGCATCAACCGGAGCAGCGACG10.628930817610063No Hit
GAGTGTAGATCTCGGTGGTCGCCGTATTCCCATGTACTCTGCGTTAATAC10.628930817610063Illumina Single End PCR Primer 1 (96% over 27bp)
AACACGACGCTCTTCCGATCTCATGATGCAAGGACTGGAGTTGCTGGGAA10.628930817610063Illumina Single End PCR Primer 1 (95% over 21bp)
GTACGCCACGCAGCATGGCTACAGCAACTGGGAACTCTCGGCCGACCGTG10.628930817610063No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGTACATGGGAGCAGTGGTATCAACGCAGAGTACATGGGAGCGACACCG10.628930817610063Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GTCTGATCCTGCGCTAGAATCCGCCCCGGCTTGCGATGCATCACACGGTG10.628930817610063No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGAGATCTCGTGGCCTACCCAT10.628930817610063Illumina Single End PCR Primer 1 (96% over 30bp)
CCGGTGGCCTCGACCACATCGACGGGCCAGCCGGCAGCCGGACCGCTGGG10.628930817610063No Hit
CACCAGCATCTTGAAGCCGCGGATGGTTTCCTTCAGCGGCACGTACTTGC10.628930817610063No Hit
ATCGCGAACCGAGCAAACCGAGCCTCGGCCCGTGACCGCTTACGCACAAG10.628930817610063No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGCTTCCCATGTACTCTGC10.628930817610063Clontech Universal Primer Mix Long (96% over 25bp)
GTCTAGGGGTTCTGAGTTTGTCAAGTACTTTTTGAATTGCTCGTTCAGAT10.628930817610063No Hit
CGTTCTACATGCGCCGCCGCTGATCTGGCAGCGCGTTCAATGAAAACGGG10.628930817610063No Hit
GTCGCGTTCTTCGCGCCAAGCCAGCGCGAGCCGTATGTCGTGAGTTGCAG10.628930817610063No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGCTGTCTCTT10.628930817610063Clontech Universal Primer Mix Long (96% over 25bp)
CTATCTTTCCTACACGACGCTCTGTCCCAAGTTCCTGTCTCTTATACACA10.628930817610063No Hit
CCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCATCGAAAGTT10.628930817610063No Hit
GGGTGGTGACGCTTTCAGAGAATTCATTCTCGAGCTTCAGAAGTCTATCC10.628930817610063No Hit
GGCGGCGTTCGACGATCCGTTTCAGCGCATCGACCAGATCGTTCAAGTGC10.628930817610063No Hit
GTACATGAGAAGCAGTGGTATCAACGCAGAGTACATGGGAATGATACGGC10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CGTCAACGGCAAGCGGTATTGCACGGTCAAGTCCAGCCAACTGGCCGGCG10.628930817610063No Hit
CCGTATCATTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACT10.628930817610063Clontech Universal Primer Mix Long (96% over 26bp)
GTTCCGGCCAGGAACATGTTGATACCTTCGGGCGCCACCAGGATGGTGCC10.628930817610063No Hit
CCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATA10.628930817610063Clontech Universal Primer Mix Long (96% over 26bp)
GTGTGGGTCTACGATGCGCAAATTATTCGTCGGCAGATTGCAGCGCTGAA10.628930817610063No Hit
AGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGAATA10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 24bp)
CTCCAGCACCAAGCACAGACCTGGCACACAATGAATGTTCACTGAAAGAA10.628930817610063No Hit
CTTTACTACAGCCCGCTGCCCGATGACACCGGCCGCCCGGCGGGTGTGCT10.628930817610063No Hit
GATGAATAAGACATTGTCCTTATCCCCAAGAAGCTCAGAGTTAAGAAGGA10.628930817610063No Hit
CCCAGCGGCAGGCGCTGGACGAGCAGGGAAGGGCGATGATCCCGATCGAT10.628930817610063No Hit
TCCTCCCTCAGCTTCCCATGTAGCTGGGACGACAGATGTGTACCAACATG10.628930817610063No Hit
GGTATCAACGCAGAGTACATGGATGACGGCGACACCGAGATCACACTCTT10.628930817610063No Hit
CACTAAAAAAAGCTAAAACCATCTAAATATATACACTATACCTCGCCGAA10.628930817610063No Hit
TCTGGAGGCCAGGAAGTCCAATATCAGTTTTATCGGTATCTGTAGGGCCA10.628930817610063No Hit
GTGCAGTTCCGTTTCTTGCGTCTGATGCCGGAGCAGGGCGAGCAGCACTA10.628930817610063No Hit
ACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAGTACTCCTGA10.628930817610063Clontech Universal Primer Mix Long (95% over 22bp)
TAACGAGATGCGCTGCGAGACTGCTGCTCCACACCTATCCCGGCAGGGCT10.628930817610063No Hit
ACTTGGGACAGGAAGAGCGTCGTGTAGGGAATACCCCATGTACTCTGCGT10.628930817610063Illumina Single End PCR Primer 1 (95% over 22bp)
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTTTAACACA10.628930817610063No Hit
GCCTGAAGACCGGCCGCGCCTGCTGGCCGCCGTCGCGTCGACCGCCTCGC10.628930817610063No Hit
CTACGAGACAAATACGGCGCGAATGAGCGCAGTCAGAAGCTGAAGTACCA10.628930817610063No Hit
ACCACCAGCCGCGTGAACGGCAGCAGCGCCACCAGCAGGATGATGAATGG10.628930817610063No Hit
TGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT10.628930817610063Clontech SMART CDS Primer II A (100% over 26bp)
TTCCCTACACGACGTCTTCCGATCTCAGATTCTGTCGGTACCAGAGATCG10.628930817610063No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGATAACTGT10.628930817610063No Hit
CCTCAGCTACAGGTCTGTTGAAGTTTGCTGGAGCTCCACTCCAGACCCTG10.628930817610063No Hit
GGAAAAAAGAGAAAGCGTTAGCTGAAGCTGCGGCTTTATTACTTTTGCGA10.628930817610063No Hit
TCTTCCTGGCGCGTGATGCGCTCGACCTGCACGCCCGCCAGTTGCTTGAG10.628930817610063No Hit
GGTCAACCTCGACACGCACATCGCCGATGTCGTCAATCTGCTCGAGTGCG10.628930817610063No Hit
CGCGTCGTCAACCTCAATGGAGAAGACCTCGGCAAGATCACCGACATCAT10.628930817610063No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTAGATCTCGGTCTGTCTCTTA10.628930817610063Illumina Single End PCR Primer 1 (96% over 30bp)
GTCCCCACGCGGTGTCTTGCGCAGATGCAAGAATGGCGCTCGCGTGTGTC10.628930817610063No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCTGTCTCTTATACACA10.628930817610063No Hit
GTATGATTCATGGTTGTTTAAGCTTACAAAATTGCTGTGAAACTGATATT10.628930817610063No Hit
CTCTTCCGATCTGGTACCAACAGGTCCTGAAAAACGAGCGTCGTGTAGGG10.628930817610063No Hit
GCGCGACAAAGCCACCCGAATCGCGGATCACCGTGACCGGTACGCCGTCG10.628930817610063No Hit
GATCTACACTCTTTCCCTACACGACGCTCTTCCGATCCTGTCTCTTATAC10.628930817610063Illumina Single End PCR Primer 1 (97% over 37bp)
CTCTTTCCCTACACGACGCTCTTCCGATCCTGTCTCTTATACACATCTCC10.628930817610063Illumina Single End PCR Primer 1 (96% over 29bp)
TCGGGGGATGCACGCAGGAACGCCGCGACAAAGCGGTCCTGGTCGGCACG10.628930817610063No Hit
CTTCTTGTGACAGCTCCAGCACGGTGCTCGTGCGCGGGTACAGGGCAGGG10.628930817610063No Hit
GCATACGTCATGATCCGAGGTGCTACCGGAGCCAAGAATTTCGAAAAGTC10.628930817610063No Hit
TTTCACTATAAAATCAAATCCCTTTACTTTAGGGTTACTCATGTTACTTC10.628930817610063No Hit
GTATCAACGCAGAGTACATGGGTAAGCAGTGGTATCAACGCAGAGTACAT10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGTGCAAGGCCACCTGCCCAAGCGCATGGAAATCGATACGCTGCTGCCCG10.628930817610063No Hit
ATGCGGGACAGAGCACCAATCAGTGGAACGTCGGCAACCTGGTGGTGGAA10.628930817610063No Hit
GTCTTCAGGCGTGGCAAGGCGAGTGGAGAAGGTCATGGACAGTTCTGGCG10.628930817610063No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCTGTCTCTTATACACA10.628930817610063No Hit
GTATCAACGCAGAGTACATGGGTGAGGCGACCACCGAGTCTACACTCTTT10.628930817610063No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGAGCTGTCTCTTA10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTGCGGGCCACTCGGCCAACTGACGTCGGCCTCTCCTGTCTGGATGTCCA10.628930817610063No Hit
TTCTTCCAGTCCTCAAAAACCGGCGTGACGATGCGGGCCTTGAGCACCTT10.628930817610063No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAC10.628930817610063No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACAAAAAAAAAAAAAAAA10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTTCCCTACACGACGCTCCTGAAAAACGAGCGTCGTGTAGGGAAGAGTGT10.628930817610063No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACTGTCTCTTAT10.628930817610063Clontech Universal Primer Mix Long (95% over 21bp)
GATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTGCCCAGGTCTTG10.628930817610063Illumina Single End PCR Primer 1 (100% over 38bp)
GCATTACTTCACGTGCGGCGGTTCTTCAAAGGTGTGGAACGGCGCCGGCG10.628930817610063No Hit
GTGCCGACCGAATGGTCCCGCGCCAATAAAGGCGGCGCGCCGGTCGATTG10.628930817610063No Hit
CAACGCAGAGTACATGGGAAGCCGTGGTATCAACCTGTCTCTTATACACA10.628930817610063No Hit
GAGCATGCTGTCTCAGAAGCAGATCCTGGAAGACCTGCAACGGCTGGGTG10.628930817610063No Hit
GCCCGGACCCTGGACCTGCCCCGAGGAGCGCCGCACAGCGCTCCTATTTC10.628930817610063No Hit
GCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG10.628930817610063Clontech Universal Primer Mix Long (96% over 26bp)
GCTTGCCAGCGAGCGCGCGGAAGCCGAACGCATTGCAGGAGGCGCACTCC10.628930817610063No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG10.628930817610063Clontech Universal Primer Mix Long (96% over 26bp)
GTGCTGACCGAAGCCAACCTGCCGCTGGTCGGCCCGGCCACCGGGGCGTC10.628930817610063No Hit
CGACTACGGCGCGCCGTCGCTGGCGTCGATCCTGCATTACCGCTGGCGCC10.628930817610063No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGATACCCTGTCT10.628930817610063No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGCTGTCTCTTATACACATCTCC10.628930817610063No Hit
CCAGAACAACTGTATAGCTTAGATACGTAACTTACTAGCCATGTTGAGCT10.628930817610063No Hit
CACGGGCACCGGTGCACTGACCGCGCTCGCGCCCATCACCGCCGGGGCCA10.628930817610063No Hit
CAACAAGGTCATGCAAGAGAAGCAGAGGAAGCAAGTAGCAAAGGAAATAA10.628930817610063No Hit
GTATCAACGCAGAGTACATGGGACATGGTATCAACGCAGAGTACATGGGA10.628930817610063No Hit
TATCAACGCAGAGTACATGGGAAACGCCCCGAGATTACACTCTTTCCCTA10.628930817610063No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGTTAGGGACCACC10.628930817610063Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTATCATTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCT10.628930817610063Clontech Universal Primer Mix Long (96% over 26bp)
GTCGTGTAGGGAAAGAGTGTAGATCCCATGTACTCTGCGTTGATACCACT10.628930817610063Illumina Single End PCR Primer 1 (96% over 27bp)
CTACACTCTTTCCCTACACGACGCTCTTCCTGTCCCAAGTTCTGCAGGTA10.628930817610063Illumina Single End PCR Primer 1 (96% over 30bp)
CCACAGCGCCTCGAGCTGCGCGGTGCCGGCCGCGTGCGGATTGCACGCAA10.628930817610063No Hit
CAACGCAGAGTACATGGGTGAGGGGGGCCCCCGATATTAACAAATATCCA10.628930817610063No Hit
GAAGGGAAATCCTGAGATGTCAGTGAGGCCCTCTCTTCTTCCCTCCCCTG10.628930817610063No Hit

[FAIL]Adapter Content

Adapter graph