FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003680695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003680695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTTCGTTATCGATCCACCTGCGCTTGCACGCGCTGCCTGACAGTCTGC24.444444444444445No Hit
CTCGTAGCGATTGCTGCGCGTTGCTGCATCGGGAATGCCGAACAGCACGG24.444444444444445No Hit
CGCAGCGCAATCTGCGGCGCAAAGCCGGCCTTGTCAAAGGCGGCCATGAA24.444444444444445No Hit
ATCTGCGCCGGCGCATTGGCAATACCCGCCATATCTGCCGCCGGCACCTC24.444444444444445No Hit
CCCGCTGCATGCGCGGCTGGTGTTGATGAAGCTGATCACGGGGGCGTTTC24.444444444444445No Hit
CGCATATTGAGACGGCATGACCGGGTGTTGAGACACAGAGACCATTTATC24.444444444444445No Hit
CTTCGAGACGGAACGCTGCTCGTCGGTGGAAGCAAGGATGGCCCCATCAC24.444444444444445No Hit
GATTTTTGCGAGTGACTCACAAAAGTGCTTGCCAGCCGCGCTTCCGCACA24.444444444444445No Hit
CACCGGCGTCGACCAATGCTTTGGCCCGGTTCACGGCGGCCGGAGTTCCT24.444444444444445No Hit
GAGCACCACACTCGTCTGTCGGATACGCAGCACCGACCACACGCACACCA24.444444444444445No Hit
GTGCTAATGGATATTCGCCATCCGCTGAAAGATTTGGATCAGCAGATGAT12.2222222222222223No Hit
CGCAAGCGCCCGGCTTGCGATTGAGCGCAGGAGGCAGTCGCACTACAATC12.2222222222222223No Hit
CAGAGAGTTTGCGTAGTTCCACTTGTTGCTCCTCATGAAATAGGCGCGAA12.2222222222222223No Hit
GGTTTGAGAAGAATCAGCCGCCAACACCTAGAGATGTCAACGTAGTCAGG12.2222222222222223No Hit
GTGATCACGCGCTCGTGCACGTCGACCTGCGTGGCAGCCAGGCCAACGCC12.2222222222222223No Hit
GCATTTCGGCGAGATGGGCAGCCGCTGGGGCATCAACCGCACCGTCGGGC12.2222222222222223No Hit
GACTGTGTAACTGCTTGAAAGGCTGTTCCATCTGTTCGCTCCTGCACCTG12.2222222222222223No Hit
ACAGACTGACCTCCGTGTTGGAGGGTTGATTGCCGCGCGAGTCTGTGTCT12.2222222222222223No Hit
GTGTCAAGCCATAGGAAAACTCGGCGGTTGTGCGCCAGCCCTGCGGCGTC12.2222222222222223No Hit
ACGCAGCCCGCACCGCCTCGGCCAGCGGCACCCAGCGGAATTGGATCTCG12.2222222222222223No Hit
CATATGGGCCACTTGGAGCAACAAGTTCCGCTGTTGGAACGGTTGCTGCA12.2222222222222223No Hit
GTCCAGGCTCGTCGGCACCTGCTGGGCGGAGACGCCCTGGATCTGCGGCA12.2222222222222223No Hit
CGGACGAACAGCTCCACGGGCACCAGGGCCTGCGACGCCTCGTAGAGCGC12.2222222222222223No Hit
GACAGTGTCGACGGTGCCGGGCCGGAGATTTTCTCGACCACCGCGCCACG12.2222222222222223No Hit
CACACACGCACGGCGCTCCAACCACCCGTTCTGCGCTGCCGCGGCCAGCA12.2222222222222223No Hit
CTGCACGCGTGAGGAGCAGCTCCGGTGGATTCTCGAAGCATGGGAGGCCG12.2222222222222223No Hit
CCGCCGACATTCCCGACAGCGAATGGACGCGATTCGTGTGCGTCGAAACT12.2222222222222223No Hit
GCCCAGGAAGGCGGTGCCGAGCAGCCGTTCTTTTTCTTCAGCCAGCTCGA12.2222222222222223No Hit
CAAAAAAACGTCCAGAGGTTTTGGTACCTGCTGGAACCTTAGAAAAGTTA12.2222222222222223No Hit
CGTGCGTGCTTGAGGACGGCGCCGCCGGCGACCATGCCGAGGCGCTCGCC12.2222222222222223No Hit
GTCCGGGCTGGTCTGCGCCGTGTTCATCGTGCTGACCTGCAATATCGTCA12.2222222222222223No Hit
GTCGAGCACCGGCGCAGCAATCGTCGAGATGTTGGCTTCGAAGAAACCTT12.2222222222222223No Hit
GGTCAAAAGCTCACCGTAGCTGCCATCAGCATGCAGATGCGTAGAGATGA12.2222222222222223No Hit
CAACAGGGCCTTGTAGCGGGTGACCGGCTCGGCCGTTTCCCTCAGCGGGC12.2222222222222223No Hit
ATATCGCCCAAACGTAGAGACATCGTGTCCTCCATACACAGATTTGGAAC12.2222222222222223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)