FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003680696

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003680696
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGTAGCGCTCCGCGGCGGGCGCCTGCCCGATGTCGGTATAGCCCAT24.444444444444445No Hit
GAACGGGGTGGCTGGAGTTCCAGTTCGGGAAGTCTAGGCAGACGGACCTG24.444444444444445No Hit
CCTGGTATGACCTGGTCGTGACCGCACCCTTTGCCACGCCATGGACGTTC24.444444444444445No Hit
ACCACATCGCGTGTGCGGATGCTGCTGCCGACAGCGTCGCCGTGGCGCTG24.444444444444445No Hit
GGCGTGTACATCTCCGGCGCGGTGCTGTCCGCGGATCTGGGCTTGCCGGA24.444444444444445No Hit
GGTCGACCGCTCGCCATTGCGCGCCGCGCACCCTCGTAATGGAAATACAA24.444444444444445No Hit
GGCCAACTCGACGCCATCGTCATCGCGCTGGGCGAGCCGCTGCGCAATCC24.444444444444445No Hit
GTCGATACCCTTCCGCCGGCCATCAGCATCGACGTTATCAGCGGCGACAA24.444444444444445No Hit
AAATCCGCCGCACCCAGTATTAAGCGCCCACACTTATCGGCTGTTTGCTT24.444444444444445No Hit
CACGACCATCTCTGTCTTCTGGATCATCGCGCTCAATTCGTGGATGCAGA24.444444444444445No Hit
CCTAAGCGCCAAGACGTATGAGCAACGACCTCATCCCAGAAGACGTGCAG12.2222222222222223No Hit
CGTCGAAGTTGTAGCCGCCGGCGTTGAAGTTGCCCCAATAGTTCACGTAG12.2222222222222223No Hit
AGTTGTGGCGGCGCTGAGCCTCGTTCTGCATCGCGGGGATTGGGCAGTGC12.2222222222222223No Hit
CATCATGGCCCTACTGAATATCCTGCAATACCCTGACCCGAGGCTGCACA12.2222222222222223No Hit
GTGCATACATGACAGCCGCCGCCGTTGCCGTGCTGTGTATGACCGCGGAC12.2222222222222223No Hit
GTTCCATTCCGGGCATGGCGCGTGCTGTGTTGGCACTGGCGCCATCCGCC12.2222222222222223No Hit
AGGCTGTTCCAATCGAACGCGCCGAGCAGCGACCAGATGGTGATGGCCCG12.2222222222222223No Hit
GTCCCAGACCGGAAGCCCGCCCCCGACCGACCCGACGGCGCCTGCGGCGG12.2222222222222223No Hit
GCTTGTCCACGCCTTGTTTCTTCAACGAAGAAAACGTTTCAACCTGCACA12.2222222222222223No Hit
GTGTTGGCGTTGCGAAACTTCAAGCGCCCGCATTGCGCATGCTGCGATGG12.2222222222222223No Hit
CTCGTGGAGGAAGCCGATGTGCGCGCCGCCGATTGGCGGGTGCTGCTGGA12.2222222222222223No Hit
ACACAGACTCGCGCGGCAATCAACCCTCCAACACGGAGGTCAGTCTGTCT12.2222222222222223No Hit
GTCCCATATCCCGCAATTCACGGAACCACTCACCTGCTCCCTGTTCATTT12.2222222222222223No Hit
GGTCAAACCTGGTATGCCCTACCTCGATATCGTGCGGCGGGTGAAAGAGA12.2222222222222223No Hit
CGGCATCCGGGCCGGGTTGATCGAGAAGATCCGACGGGAGGCCCGGCACG12.2222222222222223No Hit
GCGTTCGACAACGAACTTACTCAAGAGTAAGAATACTCTATAGATACCAA12.2222222222222223No Hit
GATCGCGTGTTCGAGCTCCTCATGGGCTCCGAAGTCGCCCCTCGCAAGCA12.2222222222222223No Hit
GATCAGTACGTGAAGTCCGGAGCCGTTAAATATGCGCTGGTGATCGGTGC12.2222222222222223No Hit
GTCGTCCTTGCCCTGAGCGCCCATTGCCAGTCCCTTCGAAGCTTCAGGCC12.2222222222222223No Hit
GTCCAGATGTCGTCCGGGGCGGAAAAATATTCCCGCCGGTCGCCCGGCTT12.2222222222222223No Hit
ATGCGCTGGGGCTCCACAAAGGTCAGCGCGCCGCAAATGGCCAGCAGCGA12.2222222222222223No Hit
GTTCCACGCGAGCTGAAAACGCAGGCTGCGCGCCTTGGGGTTTTGTTGCA12.2222222222222223No Hit
ATCCTGCCTAATTTGCCTGACTACGTTGACATCTCTAGGTGTTGGCGGCT12.2222222222222223No Hit
GTGCTGGGTTTGTCCGCATGGTCGGCCCATGCCGTACTTCCTGATGAAAT12.2222222222222223No Hit
TTTCGGGTCTGGCCGGTTTGTCTTTTTTGAAGACGGTGCCGTGTGTGATC12.2222222222222223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)