FastQCFastQC Report
Tue 10 May 2022
EGAF00003681124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences616635
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT18080.2932042456234239No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG12340.20011838445758026No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT12100.1962262927015171No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC11820.19168551898611008No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG10510.17044118481759873No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA10220.16573824061235579No Hit
GTCCCACAGTGTGGCTGTTTGGCAACAACCAGTCCATAGAAGAGGTAGCT9340.1514672375067909No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA8670.14060181468778127No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC7690.12470910668385674No Hit
GTGTGGCTGTTTGGCAACAACCAGTCCATAGAAGAGGTAGCTGTGGAGGT7300.11838445758025412No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC7130.11562755925304273No Hit
GTATCAACGCAGAGTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTC7020.1138436838648471No Hit
GTATGGAGGAGATGTGTCTCATGGAGAAGCATCCGGGCTCAGGTGACCTT6760.10962725112911202No Hit
GTTAAGAAGAGTCCCACAGTGTGGCTGTTTGGCAACAACCAGTCCATAGA6510.10557298888321293No Hit
TGCTAGTAGCTGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCA6500.10541081839337695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)