FastQCFastQC Report
Tue 10 May 2022
EGAF00003681125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585338
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT17460.29828919359412853No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG12110.20688901113544655No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT11790.20142208433417957No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC11320.19339253559481873No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG10500.17938353566657214No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA10390.17750427957863663No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA9620.164349486963088No Hit
GTCCCACAGTGTGGCTGTTTGGCAACAACCAGTCCATAGAAGAGGTAGCT9300.15888256016182103No Hit
GTGTGGCTGTTTGGCAACAACCAGTCCATAGAAGAGGTAGCTGTGGAGGT8130.1388941090446887No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC7320.12505595057898172No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6890.11770976768977924No Hit
GTATGGAGGAGATGTGTCTCATGGAGAAGCATCCGGGCTCAGGTGACCTT6540.11173031650089349No Hit
GTGTTATCCATGTATTTGCAACAGCAGAGAAACAGTGACAGTGGACCATC6440.11002190187549758No Hit
GTATCAACGCAGAGTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTC6390.10916769456279962No Hit
GTTAAGAAGAGTCCCACAGTGTGGCTGTTTGGCAACAACCAGTCCATAGA5960.10182151167359714No Hit
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC5950.10165067021105753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)