FastQCFastQC Report
Tue 10 May 2022
EGAF00003681126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences585338
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT16020.2736880229884272No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG11920.20364302334719428No Hit
GGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCT11740.2005678770214816No Hit
GTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGC10730.18331288930498277No Hit
GGACACAGCTGGGTTCTGAAGCTTCTGAGTTCTGCAGCCTCACCTCTGAG10040.17152482838975086No Hit
ACCTAATACAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGA9610.1641786455005484No Hit
GTCCCACAGTGTGGCTGTTTGGCAACAACCAGTCCATAGAAGAGGTAGCT8450.14436103584595567No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA8030.1371856944192928No Hit
GTGTGGCTGTTTGGCAACAACCAGTCCATAGAAGAGGTAGCTGTGGAGGT7700.13154792615548622No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC6700.11446377990152698No Hit
CTATGAGACCAGCAGCCTCTGCTCCCAGCCAGCTGTGGTATTCCAAACCA6350.10848432871264126No Hit
GTATCAACGCAGAGTACATGGGACAGGACACAGCTGGGTTCTGAAGCTTC6240.10660507262470573No Hit
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC6190.10575086531200775No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6000.1025048775237555No Hit
GTGTTATCCATGTATTTGCAACAGCAGAGAAACAGTGACAGTGGACCATC5940.10147982874851795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)