FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003681136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31
Sequences flagged as poor quality0
Sequence length100
%GC64

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTTGAGCACGGCCCGCAGCGTGCGACCGGTGTAGAGCACGTCGT39.67741935483871No Hit
CTGCATGATGCTCGAAAAGAACATCATCCCCCTCGTCCCGCTCCGCGGCA26.451612903225806No Hit
GGGCAGGAGTGGTTCCTGCCGCGGCACGCGCTGGTCGCGGTGGGCGGGGC26.451612903225806No Hit
GCTGCTCGTAAGTCCCAACCTAGCCCGCGTGAACATTGCATTGATGCTCT26.451612903225806No Hit
GACGTGAGATCTGCGACGACGCTGTCGATCTGGCTCATGGCAGAGCGCAG26.451612903225806No Hit
GGCGCTCGCCGCCCACCATCTCGCGAGCCACGCCAAGGACTTCGGCCCCG26.451612903225806No Hit
GCGATGAACTGTTTCATTCGCAAAGGTGTTTGCTCCAGGGGCGCAGAGAG26.451612903225806No Hit
GGTGCGACGAGTGGGGCCGGCGGGCGCGTCTCGCCTCGGGAGCATCAGCG13.225806451612903No Hit
TTATTCCCTGACGGAGGACTCTTGGAATTCCATCCATACACCTGTCTCTT13.225806451612903No Hit
CGCCATGTCCCCGGTGGGCGGGGTGGGCCTCAACCTGGCCGTGCAGGACG13.225806451612903No Hit
GTCCCAAGTTGATATTGGCCTAGGCATGGAGGCTGGCTTGGCGGTGGTTA13.225806451612903No Hit
TCTTCACGAAGTCCTCGTAAAGAAGGGTCTGGAGATGGCTCGCAGCGGTG13.225806451612903No Hit
GGCTTCGTCCGCGGCCCTTCCGGCGACATGATCGTCACCGTCTTCACCGA13.225806451612903No Hit
ATACCGGCGTCACCATGGGTGAGTTCTTCCGCGACAACGGGATGCACGCG13.225806451612903No Hit
GAGGGTGCTCCGTTAGGGTGATCGAGGACGAGGAGGATGCACATGCGCAT13.225806451612903No Hit
TCACTGTGGAGAATGACATGGCCACGATCGACGTCGGTCTTAGCGCGCTG13.225806451612903No Hit
CGCGTAGGCTGTTGATGGGGTCAGAAGAGGTCATTCGGGTTCATAAATCG13.225806451612903No Hit
TCGCGGCTCACCTCGGCGACGACGTAGGGGAAGTCCTCCGGGCGGTGCCG13.225806451612903No Hit
GAAGAAGAACCATCCGGTGGCGTAGGCGCCCTTCTCACCCATGAATTCAC13.225806451612903No Hit
GTTCATTGTCCTCCGCGACCAAAATGGCAATAAAAGGTGCTGCCATTTTG13.225806451612903No Hit
GGCTACGTCCGCGGCCCTTCCGGCGACATGATCGTCACCGTCTTCACCGA13.225806451612903No Hit
GCCGAACGCCATGCCGAGGAACGGGGCGAGGAAGAGCAGGCCGATCAGCC13.225806451612903No Hit
CCACCGGCTTTGGCGTGGTGGACGTCGACGGGCCCCACCTGCGCTACGTG13.225806451612903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)