FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003681138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCCACAATTAGCGCGCACCGGAGCACCGTGGCAATGGGTCGAGAATGA412.121212121212121No Hit
GAAACCAGGCCTTAAGCGCAGATAACATGAACAATGCCGCAGGCATTCTG39.090909090909092No Hit
TACCCAGGTCGATCGACAGATCGCTGGAAAACATGCCACGCAGTTTCTTG39.090909090909092No Hit
GTCGCTGAAATTGCCATTGCCATGGTTTTGACGGCTGGGCCGAACCTTCG26.0606060606060606No Hit
CCCATAAAGCAGATGAACTTCCGTTAATCATCGAACTGGTGAGCAAAGAT26.0606060606060606No Hit
CTGCATGATGCTCGAAAAGAACATCATCCCCCTCGTCCCGCTCCGCGGCA13.0303030303030303No Hit
CTTTACCGGCGCAGAATTTATCGTTCATTTCCTGGAACAGCAGGGCATTA13.0303030303030303No Hit
TCTTCATCCTGGCTAAACCGACAGTTGCAGCGTCGATCGTCGTGCGACCC13.0303030303030303No Hit
GGGCGTAGGCGGTGCCGGCAGCGATGAAGTCGGCCATGGCCCCGGCCTCG13.0303030303030303No Hit
CTTCGTATGCAGCCTCCGGCAGCGGGGAGAACCCGACCAGCGACAGCAGG13.0303030303030303No Hit
CCCGCGCCCCGTCCTACCGTGCACCGGACACCCCGGCGCGGCGAGGCGGA13.0303030303030303No Hit
CTCAGCTTCCGCTTTCGGATTTTGCACGATGTTCGTGCGCCACATCGGCG13.0303030303030303No Hit
CCGTACGCCTGCTCAGGCGGCGGCCTCCGCTCTGCGCGCCCTCCGGGCCG13.0303030303030303No Hit
CGTCTGTTTCGAGTACGAATGGCTTGCGTTTGTCGGGCATCAGGAGGATG13.0303030303030303No Hit
CTCTTGCAGGGTGAGCCGGTCCAGGAGCGCTTTCCCACCGATGACGTGCA13.0303030303030303No Hit
ACCCGGAACCCTCCCGACTCTTTGAACTGTTGGCGGATGAGGAACCGGCC13.0303030303030303No Hit
AGCCCAGGGGGCGAGGTCAGCCCCGGGCGCCTCGGTCAGCTCATGAGGCT13.0303030303030303No Hit
TGATCGAGGTGGACGAGCGCTACAGCACCACCGAAGCGCACGCCCACGGG13.0303030303030303No Hit
GGCGAACCCGGCCTCGCCCAGCGCAACGTCACCGTCTTCGCCGACGGCGA13.0303030303030303No Hit
GTTGAGGAAGACGACCTCCTTGCCCGGGTTGCGCGCGTTGTGGCGCGCCA13.0303030303030303No Hit
GGCGTAGTTAGTAGTGATTGAGCCAGTCGGGATTAGCGCGCAGCAAGCCT13.0303030303030303No Hit
GAAATGTCTGAGTCGACAAGGCCGATAGGCTTGGCTGCACCCCACTATGG13.0303030303030303No Hit
GTCCCACAATTAGCGCGCACCGGAGCACCGTGGCAATGGGTCTAGAATGA13.0303030303030303No Hit
CCACCGGCTTTGGCGTGGTGGACGTCGACGGGCCCCACCTGCGCTACGTG13.0303030303030303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)