FastQCFastQC Report
Tue 10 May 2022
EGAF00003681173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003681173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1616586
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGCCACACAGTGCAAAATTGCCAGGGCTTCTGCCAGGTTCAGCAGCAGG46130.2853544444898075No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA20130.12452167716409768No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC19020.11765535517442313No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT18400.11382011226127159No Hit
GTGTAGCCTGGGCTACTGTGTCTGGTATGGCTCAGCCTTTGCCCAGGCTT17870.11054159815809365No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT16460.1018195134685071No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT16370.10126278465853347No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)